Search of human proteins with 169171930

Search of human proteins with 169171930

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169171930 PREDICTED: hypothetical protein [Homo sapiens]
         (169 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169171548 PREDICTED: hypothetical protein [Homo sapiens]           356   5e-99
gi|169171930 PREDICTED: hypothetical protein [Homo sapiens]           356   5e-99
gi|169170986 PREDICTED: hypothetical protein [Homo sapiens]           356   5e-99
gi|239509056 PREDICTED: hypothetical protein [Homo sapiens]           356   5e-99
gi|22748835 transmembrane protein 178 [Homo sapiens]                  122   1e-28
gi|13376349 PDZ domain containing 7 [Homo sapiens]                     28   4.9  
gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo sa...    28   4.9  
gi|33469985 FK506 binding protein 9 [Homo sapiens]                     27   6.4  
gi|22027551 voltage-dependent calcium channel gamma-5 subunit is...    27   6.4  
gi|7656950 voltage-dependent calcium channel gamma-5 subunit iso...    27   6.4  

>gi|169171548 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 169

 Score =  356 bits (914), Expect = 5e-99
 Identities = 169/169 (100%), Positives = 169/169 (100%)

Query: 1   MAAGRLLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN 60
           MAAGRLLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN
Sbjct: 1   MAAGRLLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN 60

Query: 61  NNLPLRASRSRLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQGFDPE 120
           NNLPLRASRSRLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQGFDPE
Sbjct: 61  NNLPLRASRSRLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQGFDPE 120

Query: 121 IAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHALRKCT 169
           IAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHALRKCT
Sbjct: 121 IAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHALRKCT 169


>gi|169171930 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 169

 Score =  356 bits (914), Expect = 5e-99
 Identities = 169/169 (100%), Positives = 169/169 (100%)

Query: 1   MAAGRLLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN 60
           MAAGRLLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN
Sbjct: 1   MAAGRLLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN 60

Query: 61  NNLPLRASRSRLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQGFDPE 120
           NNLPLRASRSRLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQGFDPE
Sbjct: 61  NNLPLRASRSRLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQGFDPE 120

Query: 121 IAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHALRKCT 169
           IAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHALRKCT
Sbjct: 121 IAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHALRKCT 169


>gi|169170986 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 169

 Score =  356 bits (914), Expect = 5e-99
 Identities = 169/169 (100%), Positives = 169/169 (100%)

Query: 1   MAAGRLLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN 60
           MAAGRLLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN
Sbjct: 1   MAAGRLLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN 60

Query: 61  NNLPLRASRSRLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQGFDPE 120
           NNLPLRASRSRLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQGFDPE
Sbjct: 61  NNLPLRASRSRLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQGFDPE 120

Query: 121 IAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHALRKCT 169
           IAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHALRKCT
Sbjct: 121 IAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHALRKCT 169


>gi|239509056 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 169

 Score =  356 bits (914), Expect = 5e-99
 Identities = 169/169 (100%), Positives = 169/169 (100%)

Query: 1   MAAGRLLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN 60
           MAAGRLLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN
Sbjct: 1   MAAGRLLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN 60

Query: 61  NNLPLRASRSRLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQGFDPE 120
           NNLPLRASRSRLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQGFDPE
Sbjct: 61  NNLPLRASRSRLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQGFDPE 120

Query: 121 IAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHALRKCT 169
           IAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHALRKCT
Sbjct: 121 IAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHALRKCT 169


>gi|22748835 transmembrane protein 178 [Homo sapiens]
          Length = 297

 Score =  122 bits (306), Expect = 1e-28
 Identities = 73/168 (43%), Positives = 96/168 (57%), Gaps = 10/168 (5%)

Query: 6   LLLYTGLSLALCALGMLAVAICSDHWYETDARKHRDRCKAFNTRRVDPGFIYNNN---NN 62
           L+    L L+LC+LG+L  AI +DHWYETD R+H++ C+  +    DP    N     ++
Sbjct: 6   LVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCER-SRAGADPPDQKNRLMPLSH 64

Query: 63  LPLRAS----RSRLDRWEGKLLRARNRRQLFAMSPAD-ECSRQYNSTNMGLWRKCHRQGF 117
           LPLR S    R  L    G+     + R L  +   D EC R   +T  GLWRKC+  G 
Sbjct: 65  LPLRDSPPLGRRLLPGGPGRA-DPESWRSLLGLGGLDAECGRPVFATYSGLWRKCYFLGI 123

Query: 118 DPEIAALIRKGEIERCTYIKYHYSSATIPRNLTFNITKTIRQDEWHAL 165
           D +I  LI KG  +RCT IKYH+S     RN+ FN+TKTI+QDEWH L
Sbjct: 124 DRDIDTLILKGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDEWHLL 171


>gi|13376349 PDZ domain containing 7 [Homo sapiens]
          Length = 517

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 64  PLRASRSRLDRWEGKLLRARNRRQLFAMSPADECSRQYNSTNMGLWRKCHRQG 116
           P+  S+S L  WE K  R + +    + SP ++ + Q + T M L+ K  RQG
Sbjct: 430 PITRSQSYLTLWEEKQQRKKEK----SGSPGEKGALQRSKTLMNLFFKGGRQG 478


>gi|145386551 SH3 domain and tetratricopeptide repeats 1 [Homo
            sapiens]
          Length = 1336

 Score = 27.7 bits (60), Expect = 4.9
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 11/71 (15%)

Query: 87   QLFAMSPADECSRQYNSTNMGLWRKCHRQG--------FDPEIAALIRKGEIE---RCTY 135
            +LF+  P  EC R +    + L   C RQG        ++  +   +  G +E   R   
Sbjct: 931  RLFSRLPLGECGRDFTHVLLQLGHLCTRQGPAQQGKGYYEWALLVAVEMGHVESQLRAVQ 990

Query: 136  IKYHYSSATIP 146
               H+ SA +P
Sbjct: 991  RLCHFYSAVMP 1001


>gi|33469985 FK506 binding protein 9 [Homo sapiens]
          Length = 570

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 8/41 (19%)

Query: 119 PEIAALIRKGEIERCTYIKYHYSSATIPRNL---TFNITKT 156
           P+ + L +KG+     Y+KYHY+++ +   L   T+N+ KT
Sbjct: 380 PDCSVLSKKGD-----YLKYHYNASLLDGTLLDSTWNLGKT 415


>gi|22027551 voltage-dependent calcium channel gamma-5 subunit
          isoform a [Homo sapiens]
          Length = 275

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)

Query: 15 ALCALGMLAVAICSDHW 31
          A+C LG+L +A+ +D+W
Sbjct: 17 AVCGLGLLGIAVSTDYW 33


>gi|7656950 voltage-dependent calcium channel gamma-5 subunit
          isoform b [Homo sapiens]
          Length = 296

 Score = 27.3 bits (59), Expect = 6.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)

Query: 15 ALCALGMLAVAICSDHW 31
          A+C LG+L +A+ +D+W
Sbjct: 17 AVCGLGLLGIAVSTDYW 33


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,322,256
Number of Sequences: 37866
Number of extensions: 250449
Number of successful extensions: 531
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 12
length of query: 169
length of database: 18,247,518
effective HSP length: 95
effective length of query: 74
effective length of database: 14,650,248
effective search space: 1084118352
effective search space used: 1084118352
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.