BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169171911 PREDICTED: hypothetical protein [Homo sapiens] (106 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169171516 PREDICTED: hypothetical protein [Homo sapiens] 213 3e-56 gi|169171911 PREDICTED: hypothetical protein [Homo sapiens] 213 3e-56 gi|169170651 PREDICTED: hypothetical protein [Homo sapiens] 213 3e-56 gi|113417284 PREDICTED: similar to ubiquinol-cytochrome c reduct... 30 0.42 gi|113416816 PREDICTED: similar to ubiquinol-cytochrome c reduct... 30 0.42 gi|8923040 CDKN2A interacting protein [Homo sapiens] 28 1.6 gi|19923497 echinoderm microtubule associated protein like 4 iso... 27 3.6 gi|38638698 KIAA1199 [Homo sapiens] 27 3.6 gi|190343021 Sec24-related protein D [Homo sapiens] 27 4.6 gi|5454152 ubiquinol-cytochrome c reductase binding protein [Hom... 26 6.1 gi|38373673 synaptonemal complex protein 2 [Homo sapiens] 26 6.1 gi|21359965 CLPTM1-like [Homo sapiens] 26 7.9 >gi|169171516 PREDICTED: hypothetical protein [Homo sapiens] Length = 106 Score = 213 bits (542), Expect = 3e-56 Identities = 106/106 (100%), Positives = 106/106 (100%) Query: 1 MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR 60 MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR Sbjct: 1 MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR 60 Query: 61 STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL 106 STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL Sbjct: 61 STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL 106 >gi|169171911 PREDICTED: hypothetical protein [Homo sapiens] Length = 106 Score = 213 bits (542), Expect = 3e-56 Identities = 106/106 (100%), Positives = 106/106 (100%) Query: 1 MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR 60 MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR Sbjct: 1 MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR 60 Query: 61 STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL 106 STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL Sbjct: 61 STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL 106 >gi|169170651 PREDICTED: hypothetical protein [Homo sapiens] Length = 106 Score = 213 bits (542), Expect = 3e-56 Identities = 106/106 (100%), Positives = 106/106 (100%) Query: 1 MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR 60 MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR Sbjct: 1 MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR 60 Query: 61 STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL 106 STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL Sbjct: 61 STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL 106 >gi|113417284 PREDICTED: similar to ubiquinol-cytochrome c reductase binding protein [Homo sapiens] Length = 111 Score = 30.0 bits (66), Expect = 0.42 Identities = 13/22 (59%), Positives = 16/22 (72%) Query: 84 LYNDRAVYAKTVMDLSMTYQIL 105 LYNDR + K +DLSM +QIL Sbjct: 55 LYNDRMFHMKRALDLSMKHQIL 76 >gi|113416816 PREDICTED: similar to ubiquinol-cytochrome c reductase binding protein [Homo sapiens] Length = 111 Score = 30.0 bits (66), Expect = 0.42 Identities = 13/22 (59%), Positives = 16/22 (72%) Query: 84 LYNDRAVYAKTVMDLSMTYQIL 105 LYNDR + K +DLSM +QIL Sbjct: 55 LYNDRMFHMKRALDLSMKHQIL 76 >gi|8923040 CDKN2A interacting protein [Homo sapiens] Length = 580 Score = 28.1 bits (61), Expect = 1.6 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 19 NSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLRSTKVILPSQVKIARKASG 78 +S E + L+ G + +PL K + T+ +G +KT S++ + S V +SG Sbjct: 284 SSSEIEVPLLGSSGSSEVELPLLSSKPSSETASSGLTSKT--SSEASVSSSVAKNSSSSG 341 Query: 79 T 79 T Sbjct: 342 T 342 >gi|19923497 echinoderm microtubule associated protein like 4 isoform a [Homo sapiens] Length = 981 Score = 26.9 bits (58), Expect = 3.6 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 39 PLAYLKATCNTSPAGANNKTLRSTKVILPSQVKIARKA-SGTEK 81 P A + +C T+ +GAN K ++ V + + ++ A SGTEK Sbjct: 74 PRAVIPMSCITNGSGANRKPSHTSAVSIAGKETLSSAAKSGTEK 117 >gi|38638698 KIAA1199 [Homo sapiens] Length = 1361 Score = 26.9 bits (58), Expect = 3.6 Identities = 13/48 (27%), Positives = 25/48 (52%) Query: 15 WKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLRST 62 W Q+ E +I L+N + +R+ L Y + T + + +N+ L+ T Sbjct: 1057 WDQTAPAELAIWLINFNKGDWIRVGLCYPRGTTFSILSDVHNRLLKQT 1104 >gi|190343021 Sec24-related protein D [Homo sapiens] Length = 1032 Score = 26.6 bits (57), Expect = 4.6 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 13/94 (13%) Query: 22 ECSIQLVNIDGRRRLRI---------PLAYLKATCNTSPAGANNKTLRSTKVILPSQVKI 72 +C++ I G+RRLRI LA L +C T A N + K +L +K+ Sbjct: 746 QCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETD-ALINFFAKSAFKAVLHQPLKV 804 Query: 73 ARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL 106 R+ + ++ A Y K S Q++L Sbjct: 805 IREILVNQTAHML---ACYRKNCASPSAASQLIL 835 >gi|5454152 ubiquinol-cytochrome c reductase binding protein [Homo sapiens] Length = 111 Score = 26.2 bits (56), Expect = 6.1 Identities = 11/22 (50%), Positives = 15/22 (68%) Query: 84 LYNDRAVYAKTVMDLSMTYQIL 105 LYNDR K +DL++ +QIL Sbjct: 55 LYNDRMFRIKRALDLNLKHQIL 76 >gi|38373673 synaptonemal complex protein 2 [Homo sapiens] Length = 1530 Score = 26.2 bits (56), Expect = 6.1 Identities = 11/30 (36%), Positives = 19/30 (63%) Query: 54 ANNKTLRSTKVILPSQVKIARKASGTEKNY 83 + N T + K I ++++ RKA+ T+KNY Sbjct: 996 SKNITKKMDKTIPEGRIRLPRKATKTKKNY 1025 >gi|21359965 CLPTM1-like [Homo sapiens] Length = 538 Score = 25.8 bits (55), Expect = 7.9 Identities = 7/15 (46%), Positives = 12/15 (80%) Query: 1 MYAVLYMGHRGILPW 15 +YA +++ H G+LPW Sbjct: 104 LYAYIFLHHAGVLPW 118 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,460,929 Number of Sequences: 37866 Number of extensions: 125073 Number of successful extensions: 283 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 274 Number of HSP's gapped (non-prelim): 12 length of query: 106 length of database: 18,247,518 effective HSP length: 76 effective length of query: 30 effective length of database: 15,369,702 effective search space: 461091060 effective search space used: 461091060 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.