Search of human proteins with 169171516

Search of human proteins with 169171516

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169171516 PREDICTED: hypothetical protein [Homo sapiens]
         (106 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169171516 PREDICTED: hypothetical protein [Homo sapiens]           213   3e-56
gi|169171911 PREDICTED: hypothetical protein [Homo sapiens]           213   3e-56
gi|169170651 PREDICTED: hypothetical protein [Homo sapiens]           213   3e-56
gi|113417284 PREDICTED: similar to ubiquinol-cytochrome c reduct...    30   0.42 
gi|113416816 PREDICTED: similar to ubiquinol-cytochrome c reduct...    30   0.42 
gi|8923040 CDKN2A interacting protein [Homo sapiens]                   28   1.6  
gi|19923497 echinoderm microtubule associated protein like 4 iso...    27   3.6  
gi|38638698 KIAA1199 [Homo sapiens]                                    27   3.6  
gi|190343021 Sec24-related protein D [Homo sapiens]                    27   4.6  
gi|5454152 ubiquinol-cytochrome c reductase binding protein [Hom...    26   6.1  
gi|38373673 synaptonemal complex protein 2 [Homo sapiens]              26   6.1  
gi|21359965 CLPTM1-like [Homo sapiens]                                 26   7.9  

>gi|169171516 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 106

 Score =  213 bits (542), Expect = 3e-56
 Identities = 106/106 (100%), Positives = 106/106 (100%)

Query: 1   MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR 60
           MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR
Sbjct: 1   MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR 60

Query: 61  STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL 106
           STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL
Sbjct: 61  STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL 106


>gi|169171911 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 106

 Score =  213 bits (542), Expect = 3e-56
 Identities = 106/106 (100%), Positives = 106/106 (100%)

Query: 1   MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR 60
           MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR
Sbjct: 1   MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR 60

Query: 61  STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL 106
           STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL
Sbjct: 61  STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL 106


>gi|169170651 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 106

 Score =  213 bits (542), Expect = 3e-56
 Identities = 106/106 (100%), Positives = 106/106 (100%)

Query: 1   MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR 60
           MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR
Sbjct: 1   MYAVLYMGHRGILPWKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLR 60

Query: 61  STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL 106
           STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL
Sbjct: 61  STKVILPSQVKIARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL 106


>gi|113417284 PREDICTED: similar to ubiquinol-cytochrome c reductase
           binding protein [Homo sapiens]
          Length = 111

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 84  LYNDRAVYAKTVMDLSMTYQIL 105
           LYNDR  + K  +DLSM +QIL
Sbjct: 55  LYNDRMFHMKRALDLSMKHQIL 76


>gi|113416816 PREDICTED: similar to ubiquinol-cytochrome c reductase
           binding protein [Homo sapiens]
          Length = 111

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 84  LYNDRAVYAKTVMDLSMTYQIL 105
           LYNDR  + K  +DLSM +QIL
Sbjct: 55  LYNDRMFHMKRALDLSMKHQIL 76


>gi|8923040 CDKN2A interacting protein [Homo sapiens]
          Length = 580

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 19  NSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLRSTKVILPSQVKIARKASG 78
           +S E  + L+   G   + +PL   K +  T+ +G  +KT  S++  + S V     +SG
Sbjct: 284 SSSEIEVPLLGSSGSSEVELPLLSSKPSSETASSGLTSKT--SSEASVSSSVAKNSSSSG 341

Query: 79  T 79
           T
Sbjct: 342 T 342


>gi|19923497 echinoderm microtubule associated protein like 4
           isoform a [Homo sapiens]
          Length = 981

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 39  PLAYLKATCNTSPAGANNKTLRSTKVILPSQVKIARKA-SGTEK 81
           P A +  +C T+ +GAN K   ++ V +  +  ++  A SGTEK
Sbjct: 74  PRAVIPMSCITNGSGANRKPSHTSAVSIAGKETLSSAAKSGTEK 117


>gi|38638698 KIAA1199 [Homo sapiens]
          Length = 1361

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 13/48 (27%), Positives = 25/48 (52%)

Query: 15   WKQSNSKECSIQLVNIDGRRRLRIPLAYLKATCNTSPAGANNKTLRST 62
            W Q+   E +I L+N +    +R+ L Y + T  +  +  +N+ L+ T
Sbjct: 1057 WDQTAPAELAIWLINFNKGDWIRVGLCYPRGTTFSILSDVHNRLLKQT 1104


>gi|190343021 Sec24-related protein D [Homo sapiens]
          Length = 1032

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 13/94 (13%)

Query: 22  ECSIQLVNIDGRRRLRI---------PLAYLKATCNTSPAGANNKTLRSTKVILPSQVKI 72
           +C++    I G+RRLRI          LA L  +C T  A  N     + K +L   +K+
Sbjct: 746 QCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETD-ALINFFAKSAFKAVLHQPLKV 804

Query: 73  ARKASGTEKNYLYNDRAVYAKTVMDLSMTYQILL 106
            R+    +  ++    A Y K     S   Q++L
Sbjct: 805 IREILVNQTAHML---ACYRKNCASPSAASQLIL 835


>gi|5454152 ubiquinol-cytochrome c reductase binding protein [Homo
           sapiens]
          Length = 111

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 84  LYNDRAVYAKTVMDLSMTYQIL 105
           LYNDR    K  +DL++ +QIL
Sbjct: 55  LYNDRMFRIKRALDLNLKHQIL 76


>gi|38373673 synaptonemal complex protein 2 [Homo sapiens]
          Length = 1530

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 54   ANNKTLRSTKVILPSQVKIARKASGTEKNY 83
            + N T +  K I   ++++ RKA+ T+KNY
Sbjct: 996  SKNITKKMDKTIPEGRIRLPRKATKTKKNY 1025


>gi|21359965 CLPTM1-like [Homo sapiens]
          Length = 538

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 1   MYAVLYMGHRGILPW 15
           +YA +++ H G+LPW
Sbjct: 104 LYAYIFLHHAGVLPW 118


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,460,929
Number of Sequences: 37866
Number of extensions: 125073
Number of successful extensions: 283
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 12
length of query: 106
length of database: 18,247,518
effective HSP length: 76
effective length of query: 30
effective length of database: 15,369,702
effective search space: 461091060
effective search space used: 461091060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.