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Search of human proteins with 169170101
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169170101 PREDICTED: hypothetical protein [Homo sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169171756 PREDICTED: hypothetical protein [Homo sapiens] 197 2e-51
gi|239749140 PREDICTED: hypothetical protein [Homo sapiens] 197 2e-51
gi|169170101 PREDICTED: hypothetical protein [Homo sapiens] 197 2e-51
gi|239508844 PREDICTED: hypothetical protein [Homo sapiens] 197 2e-51
gi|195546889 RAB, member RAS oncogene family-like 5 isoform b [H... 31 0.24
gi|12232463 RAB, member RAS oncogene family-like 5 isoform a [Ho... 31 0.24
gi|134133244 killer cell immunoglobulin-like receptor, three dom... 27 2.7
gi|71743840 class IV alcohol dehydrogenase, mu or sigma subunit ... 27 4.6
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap... 27 4.6
>gi|169171756 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 197 bits (501), Expect = 2e-51
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 METKAAKEGSALTRRLRWAPAAAPRRTKMLKAKILFVGLCESGSHCSPLQTAHSWLHLVR 60
METKAAKEGSALTRRLRWAPAAAPRRTKMLKAKILFVGLCESGSHCSPLQTAHSWLHLVR
Sbjct: 1 METKAAKEGSALTRRLRWAPAAAPRRTKMLKAKILFVGLCESGSHCSPLQTAHSWLHLVR 60
Query: 61 GKHPEMEMCVSVLSPSLQRRASGGPSRVHPNPNLL 95
GKHPEMEMCVSVLSPSLQRRASGGPSRVHPNPNLL
Sbjct: 61 GKHPEMEMCVSVLSPSLQRRASGGPSRVHPNPNLL 95
>gi|239749140 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 197 bits (501), Expect = 2e-51
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 METKAAKEGSALTRRLRWAPAAAPRRTKMLKAKILFVGLCESGSHCSPLQTAHSWLHLVR 60
METKAAKEGSALTRRLRWAPAAAPRRTKMLKAKILFVGLCESGSHCSPLQTAHSWLHLVR
Sbjct: 1 METKAAKEGSALTRRLRWAPAAAPRRTKMLKAKILFVGLCESGSHCSPLQTAHSWLHLVR 60
Query: 61 GKHPEMEMCVSVLSPSLQRRASGGPSRVHPNPNLL 95
GKHPEMEMCVSVLSPSLQRRASGGPSRVHPNPNLL
Sbjct: 61 GKHPEMEMCVSVLSPSLQRRASGGPSRVHPNPNLL 95
>gi|169170101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 197 bits (501), Expect = 2e-51
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 METKAAKEGSALTRRLRWAPAAAPRRTKMLKAKILFVGLCESGSHCSPLQTAHSWLHLVR 60
METKAAKEGSALTRRLRWAPAAAPRRTKMLKAKILFVGLCESGSHCSPLQTAHSWLHLVR
Sbjct: 1 METKAAKEGSALTRRLRWAPAAAPRRTKMLKAKILFVGLCESGSHCSPLQTAHSWLHLVR 60
Query: 61 GKHPEMEMCVSVLSPSLQRRASGGPSRVHPNPNLL 95
GKHPEMEMCVSVLSPSLQRRASGGPSRVHPNPNLL
Sbjct: 61 GKHPEMEMCVSVLSPSLQRRASGGPSRVHPNPNLL 95
>gi|239508844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 197 bits (501), Expect = 2e-51
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 METKAAKEGSALTRRLRWAPAAAPRRTKMLKAKILFVGLCESGSHCSPLQTAHSWLHLVR 60
METKAAKEGSALTRRLRWAPAAAPRRTKMLKAKILFVGLCESGSHCSPLQTAHSWLHLVR
Sbjct: 1 METKAAKEGSALTRRLRWAPAAAPRRTKMLKAKILFVGLCESGSHCSPLQTAHSWLHLVR 60
Query: 61 GKHPEMEMCVSVLSPSLQRRASGGPSRVHPNPNLL 95
GKHPEMEMCVSVLSPSLQRRASGGPSRVHPNPNLL
Sbjct: 61 GKHPEMEMCVSVLSPSLQRRASGGPSRVHPNPNLL 95
>gi|195546889 RAB, member RAS oncogene family-like 5 isoform b
[Homo sapiens]
Length = 155
Score = 30.8 bits (68), Expect = 0.24
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 29 MLKAKILFVGLCESG 43
MLKAKILFVG CESG
Sbjct: 1 MLKAKILFVGPCESG 15
>gi|12232463 RAB, member RAS oncogene family-like 5 isoform a
[Homo sapiens]
Length = 185
Score = 30.8 bits (68), Expect = 0.24
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 29 MLKAKILFVGLCESG 43
MLKAKILFVG CESG
Sbjct: 1 MLKAKILFVGPCESG 15
>gi|134133244 killer cell immunoglobulin-like receptor, three
domains, short cytoplasmic tail, 1 [Homo sapiens]
Length = 382
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 41 ESGSHCSPLQTAHSWLHLVRGKHPEMEMCVSVLSPSLQRRASGGPSRVHPNPNLL 95
+ G + SP+ TAH+ + RG HP S S + +G H P+LL
Sbjct: 77 QEGFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPMVIMVTGN----HRKPSLL 127
>gi|71743840 class IV alcohol dehydrogenase, mu or sigma subunit
[Homo sapiens]
Length = 386
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 23 APRRTKMLKAKILFVGLCESGSH 45
AP +TK ++ KIL G+C + H
Sbjct: 42 APPKTKEVRIKILATGICRTDDH 64
>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
sapiens]
Length = 288
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 10 SALTRRLRWAPAAAP 24
SALTR + W PAAAP
Sbjct: 88 SALTRAVAWRPAAAP 102
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.130 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,237,130
Number of Sequences: 37866
Number of extensions: 180390
Number of successful extensions: 490
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 481
Number of HSP's gapped (non-prelim): 9
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.