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Search of human proteins with 169169820
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3
homolog 2 [Homo sapiens]
(70 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3 h... 144 1e-35
gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b pre... 124 1e-29
gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a pre... 111 1e-25
gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3 ... 108 7e-25
gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo ... 108 7e-25
gi|48928058 small ubiquitin-like modifier protein 3 [Homo sapiens] 108 7e-25
gi|239754793 PREDICTED: similar to Small ubiquitin-related modif... 105 6e-24
gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo ... 105 6e-24
gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo ... 105 6e-24
gi|239509111 PREDICTED: similar to Small ubiquitin-related modif... 105 6e-24
gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens] 100 2e-22
gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens] 86 5e-18
gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens] 86 5e-18
gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens] 86 5e-18
gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a pre... 52 1e-07
gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a prec... 52 1e-07
gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b pre... 38 0.002
gi|5803145 ralA binding protein 1 [Homo sapiens] 26 7.7
>gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3
homolog 2 [Homo sapiens]
Length = 70
Score = 144 bits (364), Expect = 1e-35
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MADKKPQEGVKTKNNHINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQLEMENEDTID 60
MADKKPQEGVKTKNNHINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQLEMENEDTID
Sbjct: 1 MADKKPQEGVKTKNNHINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQLEMENEDTID 60
Query: 61 VFQQQMGGVY 70
VFQQQMGGVY
Sbjct: 61 VFQQQMGGVY 70
>gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b
precursor [Homo sapiens]
Length = 71
Score = 124 bits (312), Expect = 1e-29
Identities = 62/71 (87%), Positives = 66/71 (92%), Gaps = 1/71 (1%)
Query: 1 MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQLEMENEDTI 59
MAD+KP+EGVKT+NN HINLKV GQ GSVVQFKIKRHTPLSKLMKAYCE QLEME+EDTI
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQLEMEDEDTI 60
Query: 60 DVFQQQMGGVY 70
DVFQQQ GGVY
Sbjct: 61 DVFQQQTGGVY 71
>gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a
precursor [Homo sapiens]
Length = 95
Score = 111 bits (278), Expect = 1e-25
Identities = 62/95 (65%), Positives = 66/95 (69%), Gaps = 25/95 (26%)
Query: 1 MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCE----------- 48
MAD+KP+EGVKT+NN HINLKV GQ GSVVQFKIKRHTPLSKLMKAYCE
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 49 -------------LQLEMENEDTIDVFQQQMGGVY 70
QLEME+EDTIDVFQQQ GGVY
Sbjct: 61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY 95
>gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3
homolog 2 [Homo sapiens]
Length = 206
Score = 108 bits (271), Expect = 7e-25
Identities = 53/71 (74%), Positives = 63/71 (88%), Gaps = 1/71 (1%)
Query: 1 MADKKPQEGVKTKN-NHINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQLEMENEDTI 59
+AD+KP+EG++T+N +HINLKV GQ GSVVQF+IKRHTPLSKLMKAY QLEME+EDT
Sbjct: 136 VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTT 195
Query: 60 DVFQQQMGGVY 70
D+FQQQ GGVY
Sbjct: 196 DMFQQQSGGVY 206
>gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo
sapiens]
Length = 164
Score = 108 bits (271), Expect = 7e-25
Identities = 53/71 (74%), Positives = 63/71 (88%), Gaps = 1/71 (1%)
Query: 1 MADKKPQEGVKTKN-NHINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQLEMENEDTI 59
+AD+KP+EG++T+N +HINLKV GQ GSVVQF+IKRHTPLSKLMKAY QLEME+EDT
Sbjct: 94 VADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAYTPAQLEMEDEDTT 153
Query: 60 DVFQQQMGGVY 70
D+FQQQ GGVY
Sbjct: 154 DMFQQQSGGVY 164
>gi|48928058 small ubiquitin-like modifier protein 3 [Homo
sapiens]
Length = 103
Score = 108 bits (271), Expect = 7e-25
Identities = 58/93 (62%), Positives = 65/93 (69%), Gaps = 24/93 (25%)
Query: 1 MADKKPQEGVKTKNNHINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCE------------ 48
M+++KP+EGVKT+N+HINLKV GQ GSVVQFKIKRHTPLSKLMKAYCE
Sbjct: 1 MSEEKPKEGVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR 60
Query: 49 ------------LQLEMENEDTIDVFQQQMGGV 69
QLEME+EDTIDVFQQQ GGV
Sbjct: 61 FDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93
>gi|239754793 PREDICTED: similar to Small ubiquitin-related
modifier 2 [Homo sapiens]
Length = 103
Score = 105 bits (263), Expect = 6e-24
Identities = 54/68 (79%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 1 MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQLEMENEDTI 59
MA+K EGVKT+NN HINLKVVGQ SVVQFKIKRHTPLSKLM AYC+ QLEME+E TI
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
Query: 60 DVFQQQMG 67
DVFQQQ G
Sbjct: 61 DVFQQQTG 68
>gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo
sapiens]
Length = 103
Score = 105 bits (263), Expect = 6e-24
Identities = 54/68 (79%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 1 MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQLEMENEDTI 59
MA+K EGVKT+NN HINLKVVGQ SVVQFKIKRHTPLSKLM AYC+ QLEME+E TI
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
Query: 60 DVFQQQMG 67
DVFQQQ G
Sbjct: 61 DVFQQQTG 68
>gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo
sapiens]
Length = 103
Score = 105 bits (263), Expect = 6e-24
Identities = 54/68 (79%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 1 MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQLEMENEDTI 59
MA+K EGVKT+NN HINLKVVGQ SVVQFKIKRHTPLSKLM AYC+ QLEME+E TI
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
Query: 60 DVFQQQMG 67
DVFQQQ G
Sbjct: 61 DVFQQQTG 68
>gi|239509111 PREDICTED: similar to Small ubiquitin-related
modifier 2 [Homo sapiens]
Length = 103
Score = 105 bits (263), Expect = 6e-24
Identities = 54/68 (79%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 1 MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQLEMENEDTI 59
MA+K EGVKT+NN HINLKVVGQ SVVQFKIKRHTPLSKLM AYC+ QLEME+E TI
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQLEMEDEGTI 60
Query: 60 DVFQQQMG 67
DVFQQQ G
Sbjct: 61 DVFQQQTG 68
>gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens]
Length = 95
Score = 100 bits (249), Expect = 2e-22
Identities = 58/95 (61%), Positives = 62/95 (65%), Gaps = 25/95 (26%)
Query: 1 MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCE----------- 48
MA++KP E VKT+NN HINLKV GQ GSVVQFKIKR TPLSKLMKAYCE
Sbjct: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF 60
Query: 49 -------------LQLEMENEDTIDVFQQQMGGVY 70
QLEME+EDTIDVFQQ GGVY
Sbjct: 61 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY 95
>gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 86.3 bits (212), Expect = 5e-18
Identities = 42/49 (85%), Positives = 45/49 (91%), Gaps = 1/49 (2%)
Query: 1 MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCE 48
MAD+KP+EGVKT+NN HINLKV GQ GSV QFKIKRHTPLSKLMKAYCE
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 86.3 bits (212), Expect = 5e-18
Identities = 42/49 (85%), Positives = 45/49 (91%), Gaps = 1/49 (2%)
Query: 1 MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCE 48
MAD+KP+EGVKT+NN HINLKV GQ GSV QFKIKRHTPLSKLMKAYCE
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 86.3 bits (212), Expect = 5e-18
Identities = 42/49 (85%), Positives = 45/49 (91%), Gaps = 1/49 (2%)
Query: 1 MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCE 48
MAD+KP+EGVKT+NN HINLKV GQ GSV QFKIKRHTPLSKLMKAYCE
Sbjct: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a
precursor [Homo sapiens]
Length = 101
Score = 52.0 bits (123), Expect = 1e-07
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 24/84 (28%)
Query: 9 GVKTKNNHINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQ------------------ 50
G K + +I LKV+GQ S + FK+K T L KL ++YC+ Q
Sbjct: 14 GDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD 73
Query: 51 ------LEMENEDTIDVFQQQMGG 68
L ME ED I+V+Q+Q GG
Sbjct: 74 NHTPKELGMEEEDVIEVYQEQTGG 97
>gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a
precursor [Homo sapiens]
Length = 101
Score = 52.0 bits (123), Expect = 1e-07
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 24/84 (28%)
Query: 9 GVKTKNNHINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQ------------------ 50
G K + +I LKV+GQ S + FK+K T L KL ++YC+ Q
Sbjct: 14 GDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD 73
Query: 51 ------LEMENEDTIDVFQQQMGG 68
L ME ED I+V+Q+Q GG
Sbjct: 74 NHTPKELGMEEEDVIEVYQEQTGG 97
>gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b
precursor [Homo sapiens]
Length = 76
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 24/69 (34%)
Query: 24 QGGSVVQFKIKRHTPLSKLMKAYCELQ------------------------LEMENEDTI 59
Q S + FK+K T L KL ++YC+ Q L ME ED I
Sbjct: 4 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI 63
Query: 60 DVFQQQMGG 68
+V+Q+Q GG
Sbjct: 64 EVYQEQTGG 72
>gi|5803145 ralA binding protein 1 [Homo sapiens]
Length = 655
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/53 (20%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 4 KKPQEGVKTKNNHINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQLEMENE 56
++ E ++ KNNH+N + + ++++ +++ L ++ +A E Q + + E
Sbjct: 560 QRQNEELEIKNNHLNQAIHEEREAIIELRVQLR--LLQMQRAKAEQQAQEDEE 610
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,571,933
Number of Sequences: 37866
Number of extensions: 78676
Number of successful extensions: 161
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 18
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.