Guide to the Human Genome
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Search of human proteins with 169168771

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169168771 PREDICTED: hypothetical protein LOC100130890
isoform 1 [Homo sapiens]
         (97 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169169157 PREDICTED: hypothetical protein LOC100130890 isofor...   201   1e-52
gi|169168771 PREDICTED: hypothetical protein LOC100130890 isofor...   201   1e-52
gi|169169260 PREDICTED: hypothetical protein LOC100130890 isofor...   201   1e-52
gi|163965377 putative thiosulfate sulfurtransferase KAT isoform ...    44   4e-05
gi|163965371 putative thiosulfate sulfurtransferase KAT isoform ...    44   4e-05
gi|17402865 thiosulfate sulfurtransferase [Homo sapiens]               27   4.6  
gi|58761486 chaperonin containing TCP1, subunit 3 isoform b [Hom...    26   6.0  
gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Hom...    26   6.0  
gi|63162572 chaperonin containing TCP1, subunit 3 isoform a [Hom...    26   6.0  
gi|122937388 MAX gene associated [Homo sapiens]                        26   6.0  
gi|61563742 hect domain and RLD 6 [Homo sapiens]                       26   7.8  

>gi|169169157 PREDICTED: hypothetical protein LOC100130890 isoform
          1 [Homo sapiens]
          Length = 97

 Score =  201 bits (511), Expect = 1e-52
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK 60
          MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK
Sbjct: 1  MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK 60

Query: 61 IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS 97
          IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS
Sbjct: 61 IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS 97


>gi|169168771 PREDICTED: hypothetical protein LOC100130890 isoform
          1 [Homo sapiens]
          Length = 97

 Score =  201 bits (511), Expect = 1e-52
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK 60
          MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK
Sbjct: 1  MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK 60

Query: 61 IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS 97
          IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS
Sbjct: 61 IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS 97


>gi|169169260 PREDICTED: hypothetical protein LOC100130890 isoform
          1 [Homo sapiens]
          Length = 97

 Score =  201 bits (511), Expect = 1e-52
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK 60
          MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK
Sbjct: 1  MKIEKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQK 60

Query: 61 IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS 97
          IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS
Sbjct: 61 IPESINVPLDEVGEALQMNPRDFKEKYNEVKPSKSDS 97


>gi|163965377 putative thiosulfate sulfurtransferase KAT isoform 1
          [Homo sapiens]
          Length = 115

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30 VTYKELKNLLNSKNIMLIDVREIWEILEYQKIPESINVPLDEVGEALQMNPRDFKEKYNE 89
          V+  EL++LL S    L DVR   E      IP ++N+P+ E+  ALQM P  F+  Y+ 
Sbjct: 7  VSLPELRSLLASGRARLFDVRSREEAAA-GTIPGALNIPVSELESALQMEPAAFQALYSA 65

Query: 90 VKPSKSD 96
           KP   D
Sbjct: 66 EKPKLED 72


>gi|163965371 putative thiosulfate sulfurtransferase KAT isoform 3
          [Homo sapiens]
          Length = 109

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 30 VTYKELKNLLNSKNIMLIDVREIWEILEYQKIPESINVPLDEVGEALQMNPRDFKEKYNE 89
          V+  EL++LL S    L DVR   E      IP ++N+P+ E+  ALQM P  F+  Y+ 
Sbjct: 7  VSLPELRSLLASGRARLFDVRSREEAAA-GTIPGALNIPVSELESALQMEPAAFQALYSA 65

Query: 90 VKPSKSD 96
           KP   D
Sbjct: 66 EKPKLED 72


>gi|17402865 thiosulfate sulfurtransferase [Homo sapiens]
          Length = 297

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 31  TYKELKNLLNSKNIMLIDVREIWEILEYQKIPESINVPLDEVGEALQMNPRDF 83
           TY+++   L SK   L+D R     L  +  P+++ +    +  A+ M   DF
Sbjct: 164 TYEQVLENLESKRFQLVDSRSQGRFLGTEPEPDAVGLDSGHIRGAVNMPFMDF 216


>gi|58761486 chaperonin containing TCP1, subunit 3 isoform b [Homo
           sapiens]
          Length = 544

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 15  IKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQKIPESINVPL---DE 71
           I+ +C      I+KDVT+  ++  + +  I+L+D       LEY+K     ++ +   ++
Sbjct: 208 IEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLD-----SSLEYKKGESQTDIEITREED 262

Query: 72  VGEALQMNPRDFKEKYNEVKPSKSD 96
               LQM     ++   ++   K D
Sbjct: 263 FTRILQMEEEYIQQLCEDIIQLKPD 287


>gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Homo
           sapiens]
          Length = 507

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 15  IKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQKIPESINVPL---DE 71
           I+ +C      I+KDVT+  ++  + +  I+L+D       LEY+K     ++ +   ++
Sbjct: 171 IEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLD-----SSLEYKKGESQTDIEITREED 225

Query: 72  VGEALQMNPRDFKEKYNEVKPSKSD 96
               LQM     ++   ++   K D
Sbjct: 226 FTRILQMEEEYIQQLCEDIIQLKPD 250


>gi|63162572 chaperonin containing TCP1, subunit 3 isoform a [Homo
           sapiens]
          Length = 545

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 15  IKGNCHNFYTAISKDVTYKELKNLLNSKNIMLIDVREIWEILEYQKIPESINVPL---DE 71
           I+ +C      I+KDVT+  ++  + +  I+L+D       LEY+K     ++ +   ++
Sbjct: 209 IEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLD-----SSLEYKKGESQTDIEITREED 263

Query: 72  VGEALQMNPRDFKEKYNEVKPSKSD 96
               LQM     ++   ++   K D
Sbjct: 264 FTRILQMEEEYIQQLCEDIIQLKPD 288


>gi|122937388 MAX gene associated [Homo sapiens]
          Length = 3114

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 4    EKCGWSEGLTSIKGNCHNFYTAISKDVTYKELKNLLNSKN-------IMLIDVREIWEIL 56
            E+C   EG  ++K + H+  T    D  YK++     ++N       + +++VR I E  
Sbjct: 2083 EECLPEEGCATVKPSEHSCITGSHTDQDYKDVNEEYGARNRKSSKEKVAVLEVRTISEKA 2142

Query: 57   EYQKIPESINVPLDEVGE 74
              + +     V   ++G+
Sbjct: 2143 SNKTVQNLSKVQHQKLGD 2160


>gi|61563742 hect domain and RLD 6 [Homo sapiens]
          Length = 1022

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 6/35 (17%)

Query: 53  WEILEYQKIPESINVPLDEVGEALQMNPRDFKEKY 87
           W+  +   IP  I++P+D      Q N RD+  KY
Sbjct: 831 WDQNDVDLIPNGISIPVD------QTNKRDYVSKY 859


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,565,574
Number of Sequences: 37866
Number of extensions: 127310
Number of successful extensions: 273
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 11
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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