Guide to the Human Genome
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Name: LOC100130890 Sequence: fasta or formatted (97aa) NCBI GI: 169168771
Description:

PREDICTED: hypothetical protein LOC100130890 isoform 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {97aa} PREDICTED: hypothetical protein LOC100130890 isoform 1
alt mRNA {97aa} PREDICTED: hypothetical protein LOC100130890 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.1          2           1
 C cysteine            2.1          2           1
 D aspartate           5.2          5           1
 E glutamate          11.3         11           1
 F phenylalanine       2.1          2           1
 G glycine             4.1          4           1
 H histidine           1.0          1           1
 I isoleucine          9.3          9           1
 K lysine             12.4         12           1
 L leucine             8.2          8           2
 M methionine          3.1          3           1
 N asparagine          8.2          8           1
 P proline             4.1          4           1
 Q glutamine           2.1          2           1
 R arginine            2.1          2           1
 S serine              8.2          8           1
 T threonine           3.1          3           1
 V valine              5.2          5           1
 W tryptophan          2.1          2           1
 Y tyrosine            4.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100130890 isofor... 
LOC100130890          1.000   PREDICTED: hypothetical protein LOC100130890 isofor...
LOC100130890          1.000   PREDICTED: hypothetical protein LOC100130890 isofor...
KAT                   0.108   putative thiosulfate sulfurtransferase KAT isoform ...
KAT                   0.108   putative thiosulfate sulfurtransferase KAT isoform ...
TST                   0.011   thiosulfate sulfurtransferase 
CCT3                  0.006   chaperonin containing TCP1, subunit 3 isoform b [Hom...
CCT3                  0.006   chaperonin containing TCP1, subunit 3 isoform c [Hom...
CCT3                  0.006   chaperonin containing TCP1, subunit 3 isoform a [Hom...
MGA                   0.006   MAX gene associated 
HERC6                 0.006   hect domain and RLD 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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