Search of human proteins with 169165769

Search of human proteins with 169165769

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169165769 PREDICTED: similar to succinate dehydrogenase
complex, subunit A, flavoprotein (Fp) [Homo sapiens]
         (109 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169165769 PREDICTED: similar to succinate dehydrogenase compl...   229   5e-61
gi|156416003 succinate dehydrogenase complex, subunit A, flavopr...   211   1e-55
gi|154816208 phosphotyrosine interaction domain containing 1 iso...    32   0.14 
gi|40255260 phosphotyrosine interaction domain containing 1 isof...    32   0.14 
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho...    27   3.5  
gi|27545323 chondroitin polymerizing factor [Homo sapiens]             27   4.6  
gi|34303941 zinc finger protein 567 [Homo sapiens]                     26   7.9  

>gi|169165769 PREDICTED: similar to succinate dehydrogenase complex,
           subunit A, flavoprotein (Fp) [Homo sapiens]
          Length = 109

 Score =  229 bits (583), Expect = 5e-61
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MVWNTDLVETLELQNLMLCALQTVNGAEAGKESRGAHAGEDYKVRIDEYDHSKPIQGQQK 60
           MVWNTDLVETLELQNLMLCALQTVNGAEAGKESRGAHAGEDYKVRIDEYDHSKPIQGQQK
Sbjct: 1   MVWNTDLVETLELQNLMLCALQTVNGAEAGKESRGAHAGEDYKVRIDEYDHSKPIQGQQK 60

Query: 61  KPFEEHWRKHTLSYVDVSTGKVTVEYRPIIDKTLNEADCATVPPAIHSY 109
           KPFEEHWRKHTLSYVDVSTGKVTVEYRPIIDKTLNEADCATVPPAIHSY
Sbjct: 61  KPFEEHWRKHTLSYVDVSTGKVTVEYRPIIDKTLNEADCATVPPAIHSY 109


>gi|156416003 succinate dehydrogenase complex, subunit A,
           flavoprotein precursor [Homo sapiens]
          Length = 664

 Score =  211 bits (536), Expect = 1e-55
 Identities = 100/109 (91%), Positives = 104/109 (95%)

Query: 1   MVWNTDLVETLELQNLMLCALQTVNGAEAGKESRGAHAGEDYKVRIDEYDHSKPIQGQQK 60
           MVWNTDLVETLELQNLMLCALQT+ GAEA KESRGAHA EDYKVRIDEYD+SKPIQGQQK
Sbjct: 556 MVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVRIDEYDYSKPIQGQQK 615

Query: 61  KPFEEHWRKHTLSYVDVSTGKVTVEYRPIIDKTLNEADCATVPPAIHSY 109
           KPFEEHWRKHTLSYVDV TGKVT+EYRP+IDKTLNEADCATVPPAI SY
Sbjct: 616 KPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPAIRSY 664


>gi|154816208 phosphotyrosine interaction domain containing 1
           isoform 2 [Homo sapiens]
          Length = 217

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 55  IQGQQKKPFEEHWRKHTLSYVDVSTGKVTVEYRP 88
           + G  +KP  E W+KHTL+  DV      +E RP
Sbjct: 74  LSGCTEKPVIELWKKHTLAREDVFPANALLEIRP 107


>gi|40255260 phosphotyrosine interaction domain containing 1 isoform
           1 [Homo sapiens]
          Length = 248

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 55  IQGQQKKPFEEHWRKHTLSYVDVSTGKVTVEYRP 88
           + G  +KP  E W+KHTL+  DV      +E RP
Sbjct: 105 LSGCTEKPVIELWKKHTLAREDVFPANALLEIRP 138


>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
            sapiens]
          Length = 1560

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 21   LQTVNGAEAGKESRGAHAGEDYKVRIDEYDHSKPIQGQQKKPFEEHWRKH 70
            L T+N A+A     G  +G  Y+ ++        +Q  ++  F EH  KH
Sbjct: 1042 LPTLNVAKAASSGPGKPSGLQYESKLSGLKKPPTLQPSKEACFLEHLHKH 1091


>gi|27545323 chondroitin polymerizing factor [Homo sapiens]
          Length = 775

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 26  GAEAGKESRGAHAGEDYKVRIDEYDHSKPIQGQQK 60
           GAE  K   G  AGE+++ R+  Y  ++P Q  +K
Sbjct: 68  GAEREKPGAGEGAGENWEPRVLPYHPAQPGQAAKK 102


>gi|34303941 zinc finger protein 567 [Homo sapiens]
          Length = 616

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 63  FEEHWRKHTLSYVDVSTGKVTVEYRPIIDKTL----NEADCATVPP 104
           F+EH  K++ S V ++  K+  E   I +KT     N  +   +PP
Sbjct: 56  FKEHQEKYSRSVVSINHKKLVKEKSKIYEKTFTLGKNPVNSKNLPP 101


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,279,808
Number of Sequences: 37866
Number of extensions: 160748
Number of successful extensions: 244
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 7
length of query: 109
length of database: 18,247,518
effective HSP length: 79
effective length of query: 30
effective length of database: 15,256,104
effective search space: 457683120
effective search space used: 457683120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.