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Search of human proteins with 169163995
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169163995 PREDICTED: similar to anaphase promoting complex
subunit 1 [Homo sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169163995 PREDICTED: similar to anaphase promoting complex su... 271 9e-74
gi|12056971 anaphase promoting complex subunit 1 [Homo sapiens] 247 2e-66
gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo ... 29 1.3
gi|169171432 PREDICTED: similar to hCG2014367 [Homo sapiens] 27 3.7
gi|169171899 PREDICTED: similar to hCG2014367 [Homo sapiens] 27 3.7
gi|169171130 PREDICTED: hypothetical protein LOC100130600 [Homo ... 27 3.7
gi|239509024 PREDICTED: similar to hCG2014367 [Homo sapiens] 27 3.7
gi|5453567 craniofacial development protein 1 [Homo sapiens] 27 3.7
gi|45446740 ATP-binding cassette, sub-family A, member 2 isoform... 26 8.2
gi|47078218 ATP-binding cassette, sub-family A, member 2 isoform... 26 8.2
gi|11761621 GDP-mannose pyrophosphorylase B isoform 2 [Homo sapi... 26 8.2
>gi|169163995 PREDICTED: similar to anaphase promoting complex
subunit 1 [Homo sapiens]
Length = 133
Score = 271 bits (694), Expect = 9e-74
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MSNFYEERTTKIAARDLQEFVPFGGDHCKHHPNALNLQLRQLQPASELWSSNGAAGFVGS 60
MSNFYEERTTKIAARDLQEFVPFGGDHCKHHPNALNLQLRQLQPASELWSSNGAAGFVGS
Sbjct: 1 MSNFYEERTTKIAARDLQEFVPFGGDHCKHHPNALNLQLRQLQPASELWSSNGAAGFVGS 60
Query: 61 LQEVTIHEKQKESWQLRKGVSEIGEDVDYDEELYVAGNMVIWSKGSKSQALAVYKAFTVD 120
LQEVTIHEKQKESWQLRKGVSEIGEDVDYDEELYVAGNMVIWSKGSKSQALAVYKAFTVD
Sbjct: 61 LQEVTIHEKQKESWQLRKGVSEIGEDVDYDEELYVAGNMVIWSKGSKSQALAVYKAFTVD 120
Query: 121 SPVQQEDMQFISI 133
SPVQQEDMQFISI
Sbjct: 121 SPVQQEDMQFISI 133
>gi|12056971 anaphase promoting complex subunit 1 [Homo sapiens]
Length = 1944
Score = 247 bits (630), Expect = 2e-66
Identities = 121/125 (96%), Positives = 122/125 (97%)
Query: 1 MSNFYEERTTKIAARDLQEFVPFGGDHCKHHPNALNLQLRQLQPASELWSSNGAAGFVGS 60
MSNFYEERTT IAARDLQEFVPFG DHCKHHPNALNLQLRQLQPASELWSS+GAAG VGS
Sbjct: 1 MSNFYEERTTMIAARDLQEFVPFGRDHCKHHPNALNLQLRQLQPASELWSSDGAAGLVGS 60
Query: 61 LQEVTIHEKQKESWQLRKGVSEIGEDVDYDEELYVAGNMVIWSKGSKSQALAVYKAFTVD 120
LQEVTIHEKQKESWQLRKGVSEIGEDVDYDEELYVAGNMVIWSKGSKSQALAVYKAFTVD
Sbjct: 61 LQEVTIHEKQKESWQLRKGVSEIGEDVDYDEELYVAGNMVIWSKGSKSQALAVYKAFTVD 120
Query: 121 SPVQQ 125
SPVQQ
Sbjct: 121 SPVQQ 125
>gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo
sapiens]
Length = 616
Score = 28.9 bits (63), Expect = 1.3
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 14 ARDLQEFVPFGGDHCKHHPNALNLQLRQLQPASELWSSNGAAGFVGSLQEVTIHEKQKES 73
A DLQ+ P G + HPN N + Q+ SE W + G + E K S
Sbjct: 139 AHDLQQAAPGPGGAHQGHPNQDNRTVSQM--LSERWYTLGPNEM--QKYNLAFQECNKGS 194
Query: 74 WQLRKGVSEIGEDV--DYDEELYVAGNMVIWSKGSKSQAL 111
W+ + +SE G EL + S +K Q L
Sbjct: 195 WE--RSISETGTATAPGVSSELLSVAAQTLQSSDTKEQLL 232
>gi|169171432 PREDICTED: similar to hCG2014367 [Homo sapiens]
Length = 594
Score = 27.3 bits (59), Expect = 3.7
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 16 DLQEFVPFGGDHCKHHPNALNLQLRQLQPASELWSSNGAAGFVGSLQEVTIHEKQKESWQ 75
DLQ+ P G + HPN N + Q+ S+ W + G ++ E K SW+
Sbjct: 117 DLQQAAPGPGRAHQGHPNQDNRTVSQM--LSKRWYTLG-PNETQKYHDLAFQECNKGSWE 173
Query: 76 LRKGVSEIGEDVDYDEELYVAGNMVIWSKGSKSQAL 111
R + EL + S +K Q L
Sbjct: 174 RRISETGTATAPGVSSELLSVAAQTLQSSDTKEQLL 209
>gi|169171899 PREDICTED: similar to hCG2014367 [Homo sapiens]
Length = 594
Score = 27.3 bits (59), Expect = 3.7
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 16 DLQEFVPFGGDHCKHHPNALNLQLRQLQPASELWSSNGAAGFVGSLQEVTIHEKQKESWQ 75
DLQ+ P G + HPN N + Q+ S+ W + G ++ E K SW+
Sbjct: 117 DLQQAAPGPGRAHQGHPNQDNRTVSQM--LSKRWYTLG-PNETQKYHDLAFQECNKGSWE 173
Query: 76 LRKGVSEIGEDVDYDEELYVAGNMVIWSKGSKSQAL 111
R + EL + S +K Q L
Sbjct: 174 RRISETGTATAPGVSSELLSVAAQTLQSSDTKEQLL 209
>gi|169171130 PREDICTED: hypothetical protein LOC100130600 [Homo
sapiens]
Length = 594
Score = 27.3 bits (59), Expect = 3.7
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 16 DLQEFVPFGGDHCKHHPNALNLQLRQLQPASELWSSNGAAGFVGSLQEVTIHEKQKESWQ 75
DLQ+ P G + HPN N + Q+ S+ W + G ++ E K SW+
Sbjct: 117 DLQQAAPGPGRAHQGHPNQDNRTVSQM--LSKRWYTLG-PNETQKYHDLAFQECNKGSWE 173
Query: 76 LRKGVSEIGEDVDYDEELYVAGNMVIWSKGSKSQAL 111
R + EL + S +K Q L
Sbjct: 174 RRISETGTATAPGVSSELLSVAAQTLQSSDTKEQLL 209
>gi|239509024 PREDICTED: similar to hCG2014367 [Homo sapiens]
Length = 594
Score = 27.3 bits (59), Expect = 3.7
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 16 DLQEFVPFGGDHCKHHPNALNLQLRQLQPASELWSSNGAAGFVGSLQEVTIHEKQKESWQ 75
DLQ+ P G + HPN N + Q+ S+ W + G ++ E K SW+
Sbjct: 117 DLQQAAPGPGRAHQGHPNQDNRTVSQM--LSKRWYTLG-PNETQKYHDLAFQECNKGSWE 173
Query: 76 LRKGVSEIGEDVDYDEELYVAGNMVIWSKGSKSQAL 111
R + EL + S +K Q L
Sbjct: 174 RRISETGTATAPGVSSELLSVAAQTLQSSDTKEQLL 209
>gi|5453567 craniofacial development protein 1 [Homo sapiens]
Length = 299
Score = 27.3 bits (59), Expect = 3.7
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 6 EERTTKIAARDLQEFVPFGGDHCKHHPNA-LNLQLRQLQPASELWSSNGAAGFVGSL--- 61
E R TK +E F + K P A + L L S L S+G + +G +
Sbjct: 175 EVRVTKEVDATSKEAKSFFKQNEKEKPQANVPSALPSLPAGSGLKRSSGMSSLLGKIGAK 234
Query: 62 -QEVTIHEKQKESWQLRKGVSEIGEDV 87
Q+++ EK K W+ K IGE++
Sbjct: 235 KQKMSTLEKSKLDWESFKEEEGIGEEL 261
>gi|45446740 ATP-binding cassette, sub-family A, member 2 isoform a
[Homo sapiens]
Length = 2436
Score = 26.2 bits (56), Expect = 8.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 3 NFYEERTTKIAARDLQEFVPFGGDHCKHHPNALNLQLRQLQPA 45
+F E+ + R LQ++V + HP ALNL L +L PA
Sbjct: 502 SFLEQGRLQQHLRWLQQYVA----ELRLHPEALNLSLDELPPA 540
>gi|47078218 ATP-binding cassette, sub-family A, member 2 isoform b
[Homo sapiens]
Length = 2466
Score = 26.2 bits (56), Expect = 8.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 3 NFYEERTTKIAARDLQEFVPFGGDHCKHHPNALNLQLRQLQPA 45
+F E+ + R LQ++V + HP ALNL L +L PA
Sbjct: 532 SFLEQGRLQQHLRWLQQYVA----ELRLHPEALNLSLDELPPA 570
>gi|11761621 GDP-mannose pyrophosphorylase B isoform 2 [Homo
sapiens]
Length = 360
Score = 26.2 bits (56), Expect = 8.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 74 WQLRKGVSEIGEDVDYDEELYVAGNMVI 101
W + V+ +GEDV ++ELY+ G V+
Sbjct: 317 WVRMENVTVLGEDVIVNDELYLNGASVL 344
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,024,670
Number of Sequences: 37866
Number of extensions: 196691
Number of successful extensions: 444
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 11
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.