Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LCTL Sequence: fasta or formatted (567aa) NCBI GI: 110681710
Description:

lactase-like

Referenced in:

Galactose and Lactose

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         36           2
 C cysteine            1.6          9           1
 D aspartate           4.9         28           1
 E glutamate           5.3         30           2
 F phenylalanine       3.9         22           1
 G glycine             7.8         44           2
 H histidine           2.6         15           2
 I isoleucine          5.1         29           3
 K lysine              6.0         34           2
 L leucine            10.2         58           3
 M methionine          2.1         12           1
 N asparagine          4.2         24           2
 P proline             5.1         29           2
 Q glutamine           4.2         24           2
 R arginine            4.8         27           2
 S serine              6.5         37           2
 T threonine           4.2         24           2
 V valine              5.3         30           2
 W tryptophan          3.5         20           1
 Y tyrosine            6.2         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lactase-like 
LCT                   0.391   lactase-phlorizin hydrolase preproprotein 
GBA3                  0.341   cytosolic beta-glucosidase isoform a 
KL                    0.298   klotho 
KLB                   0.289   klotho beta 
GBA3                  0.077   cytosolic beta-glucosidase isoform b 
TGS1                  0.005   trimethylguanosine synthase homolog 
TBC1D10A              0.004   TBC1 domain family, member 10A 
BEAN                  0.004   brain expressed, associated with Nedd4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press