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Search of human proteins with 166235184
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|166235184 KIAA1274 [Homo sapiens]
(856 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|166235184 KIAA1274 [Homo sapiens] 1734 0.0
gi|56786144 dual specificity phosphatase 23 [Homo sapiens] 49 2e-05
gi|150418005 protein tyrosine phosphatase, non-receptor type 21 ... 32 1.9
gi|155969693 myomesin family, member 3 [Homo sapiens] 31 4.3
gi|144226847 obscurin-like 1 [Homo sapiens] 31 5.6
gi|27886590 PTK2B protein tyrosine kinase 2 beta isoform a [Homo... 31 5.6
gi|27886586 PTK2B protein tyrosine kinase 2 beta isoform a [Homo... 31 5.6
gi|27886584 PTK2B protein tyrosine kinase 2 beta isoform a [Homo... 31 5.6
gi|4506301 protein tyrosine phosphatase, non-receptor type 9 [Ho... 31 5.6
gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens] 31 5.6
gi|10092691 tight junction protein 3 [Homo sapiens] 30 7.3
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 30 7.3
gi|66348165 transmembrane protein 209 [Homo sapiens] 30 7.3
gi|38570115 zinc finger protein 362 [Homo sapiens] 30 7.3
gi|239753506 PREDICTED: hypothetical protein [Homo sapiens] 30 9.5
gi|239748159 PREDICTED: hypothetical protein XP_002346542 [Homo ... 30 9.5
gi|239742057 PREDICTED: hypothetical protein XP_002342381 [Homo ... 30 9.5
gi|7706757 H(+)-transporting two-sector ATPase [Homo sapiens] 30 9.5
>gi|166235184 KIAA1274 [Homo sapiens]
Length = 856
Score = 1734 bits (4492), Expect = 0.0
Identities = 856/856 (100%), Positives = 856/856 (100%)
Query: 1 MGTTASTAQQTVSAGTPFEGLQGSGTMDSRHSVSIHSFQSTSLHNSKAKSIIPNKVAPVV 60
MGTTASTAQQTVSAGTPFEGLQGSGTMDSRHSVSIHSFQSTSLHNSKAKSIIPNKVAPVV
Sbjct: 1 MGTTASTAQQTVSAGTPFEGLQGSGTMDSRHSVSIHSFQSTSLHNSKAKSIIPNKVAPVV 60
Query: 61 ITYNCKEEFQIHDELLKAHYTLGRLSDNTPEHYLVQGRYFLVRDVTEKMDVLGTVGSCGA 120
ITYNCKEEFQIHDELLKAHYTLGRLSDNTPEHYLVQGRYFLVRDVTEKMDVLGTVGSCGA
Sbjct: 61 ITYNCKEEFQIHDELLKAHYTLGRLSDNTPEHYLVQGRYFLVRDVTEKMDVLGTVGSCGA 120
Query: 121 PNFRQVQGGLTVFGMGQPSLSGFRRVLQKLQKDGHRECVIFCVREEPVLFLRADEDFVSY 180
PNFRQVQGGLTVFGMGQPSLSGFRRVLQKLQKDGHRECVIFCVREEPVLFLRADEDFVSY
Sbjct: 121 PNFRQVQGGLTVFGMGQPSLSGFRRVLQKLQKDGHRECVIFCVREEPVLFLRADEDFVSY 180
Query: 181 TPRDKQNLHENLQGLGPGVRVESLELAIRKEIHDFAQLSENTYHVYHNTEDLWGEPHAVA 240
TPRDKQNLHENLQGLGPGVRVESLELAIRKEIHDFAQLSENTYHVYHNTEDLWGEPHAVA
Sbjct: 181 TPRDKQNLHENLQGLGPGVRVESLELAIRKEIHDFAQLSENTYHVYHNTEDLWGEPHAVA 240
Query: 241 IHGEDDLHVTEEVYKRPLFLQPTYRYHRLPLPEQGSPLEAQLDAFVSVLRETPSLLQLRD 300
IHGEDDLHVTEEVYKRPLFLQPTYRYHRLPLPEQGSPLEAQLDAFVSVLRETPSLLQLRD
Sbjct: 241 IHGEDDLHVTEEVYKRPLFLQPTYRYHRLPLPEQGSPLEAQLDAFVSVLRETPSLLQLRD 300
Query: 301 AHGPPPALVFSCQMGVGRTNLGMVLGTLILLHRSGTTSQPEAAPTQAKPLPMEQFQVIQS 360
AHGPPPALVFSCQMGVGRTNLGMVLGTLILLHRSGTTSQPEAAPTQAKPLPMEQFQVIQS
Sbjct: 301 AHGPPPALVFSCQMGVGRTNLGMVLGTLILLHRSGTTSQPEAAPTQAKPLPMEQFQVIQS 360
Query: 361 FLRMVPQGRRMVEEVDRAITACAELHDLKEVVLENQKKLEGIRPESPAQGSGSRHSVWQR 420
FLRMVPQGRRMVEEVDRAITACAELHDLKEVVLENQKKLEGIRPESPAQGSGSRHSVWQR
Sbjct: 361 FLRMVPQGRRMVEEVDRAITACAELHDLKEVVLENQKKLEGIRPESPAQGSGSRHSVWQR 420
Query: 421 ALWSLERYFYLILFNYYLHEQYPLAFALSFSRWLCAHPELYRLPVTLSSAGPVAPRDLIA 480
ALWSLERYFYLILFNYYLHEQYPLAFALSFSRWLCAHPELYRLPVTLSSAGPVAPRDLIA
Sbjct: 421 ALWSLERYFYLILFNYYLHEQYPLAFALSFSRWLCAHPELYRLPVTLSSAGPVAPRDLIA 480
Query: 481 RGSLREDDLVSPDALSTVREMDVANFRRVPRMPIYGTAQPSAKALGSILAYLTDAKRRLR 540
RGSLREDDLVSPDALSTVREMDVANFRRVPRMPIYGTAQPSAKALGSILAYLTDAKRRLR
Sbjct: 481 RGSLREDDLVSPDALSTVREMDVANFRRVPRMPIYGTAQPSAKALGSILAYLTDAKRRLR 540
Query: 541 KVVWVSLREEAVLECDGHTYSLRWPGPPVAPDQLETLEAQLKAHLSEPPPGKEGPLTYRF 600
KVVWVSLREEAVLECDGHTYSLRWPGPPVAPDQLETLEAQLKAHLSEPPPGKEGPLTYRF
Sbjct: 541 KVVWVSLREEAVLECDGHTYSLRWPGPPVAPDQLETLEAQLKAHLSEPPPGKEGPLTYRF 600
Query: 601 QTCLTMQEVFSQHRRACPGLTYHRIPMPDFCAPREEDFDQLLEALRAALSKDPGTGFVFS 660
QTCLTMQEVFSQHRRACPGLTYHRIPMPDFCAPREEDFDQLLEALRAALSKDPGTGFVFS
Sbjct: 601 QTCLTMQEVFSQHRRACPGLTYHRIPMPDFCAPREEDFDQLLEALRAALSKDPGTGFVFS 660
Query: 661 CLSGQGRTTTAMVVAVLAFWHIQGFPEVGEEELVSVPDAKFTKGEFQVVMKVVQLLPDGH 720
CLSGQGRTTTAMVVAVLAFWHIQGFPEVGEEELVSVPDAKFTKGEFQVVMKVVQLLPDGH
Sbjct: 661 CLSGQGRTTTAMVVAVLAFWHIQGFPEVGEEELVSVPDAKFTKGEFQVVMKVVQLLPDGH 720
Query: 721 RVKKEVDAALDTVSETMTPMHYHLREIIICTYRQAKAAKEAQEMRRLQLRSLQYLERYVC 780
RVKKEVDAALDTVSETMTPMHYHLREIIICTYRQAKAAKEAQEMRRLQLRSLQYLERYVC
Sbjct: 721 RVKKEVDAALDTVSETMTPMHYHLREIIICTYRQAKAAKEAQEMRRLQLRSLQYLERYVC 780
Query: 781 LILFNAYLHLEKADSWQRPFSTWMQEVASKAGIYEILNELGFPELESGEDQPFSRLRYRW 840
LILFNAYLHLEKADSWQRPFSTWMQEVASKAGIYEILNELGFPELESGEDQPFSRLRYRW
Sbjct: 781 LILFNAYLHLEKADSWQRPFSTWMQEVASKAGIYEILNELGFPELESGEDQPFSRLRYRW 840
Query: 841 QEQSCSLEPSAPEDLL 856
QEQSCSLEPSAPEDLL
Sbjct: 841 QEQSCSLEPSAPEDLL 856
>gi|56786144 dual specificity phosphatase 23 [Homo sapiens]
Length = 150
Score = 48.9 bits (115), Expect = 2e-05
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 595 PLTYRFQTCLTMQEVFS------QHRRACPGLTYHRIPMPDFCAPREEDFDQLLEALRAA 648
P Y+F L ++ + S H +CPGLT HR+ +PDFC P + D+ ++ + A
Sbjct: 25 PAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFCPPAPDQIDRFVQIVDEA 84
Query: 649 LSKDPGTGFVFSCLSGQGRTTTAM 672
++ G C G GRT T +
Sbjct: 85 NARGEAVG--VHCALGFGRTGTML 106
Score = 31.6 bits (70), Expect = 3.3
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 262 PTYRYHRLPLPEQGSPLEAQLDAFVSVLRETPSLLQLRDAHGPPPALVFSCQMGVGRTNL 321
P HRL +P+ P Q+D FV ++ E A+ A+ C +G GRT
Sbjct: 54 PGLTLHRLRIPDFCPPAPDQIDRFVQIVDE---------ANARGEAVGVHCALGFGRT-- 102
Query: 322 GMVLGTLILLHRSGTTSQPEAAPTQAKPLPMEQFQ 356
G +L ++ R A + +P +E ++
Sbjct: 103 GTMLACYLVKERGLAAGDAIAEIRRLRPGSIETYE 137
>gi|150418005 protein tyrosine phosphatase, non-receptor type 21 [Homo
sapiens]
Length = 1174
Score = 32.3 bits (72), Expect = 1.9
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 272 PEQGSPLEAQLDAFVSVLRETPSLLQ----LRDAHGPPPALVFSCQMGVGRTNLGMVLGT 327
PE G P + L F+S L E S+ + D P P L+ C GVGRT G+V+ +
Sbjct: 1066 PEHGCPED--LKGFLSYLEEIQSVRRHTNSTSDPQSPNPPLLVHCSAGVGRT--GVVILS 1121
Query: 328 LILL 331
I++
Sbjct: 1122 EIMI 1125
>gi|155969693 myomesin family, member 3 [Homo sapiens]
Length = 1437
Score = 31.2 bits (69), Expect = 4.3
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 508 RVPRMPIYGTAQPSAKALGSILAYLTDAKRRLRKVVWVSLREEAVLECDGHTYSLRWPGP 567
RV + G++ PS KA ++ DA RR ++ + L + + D ++ P P
Sbjct: 446 RVRAISRVGSSVPS-KASELVVMGDHDAARRKTEIPF-DLGNKITISTDAFEDTVTIPSP 503
Query: 568 PVAPDQLETLEAQLKAHLSEPPPGKEGPLTYRFQ 601
P E EA + EP P PLTY +
Sbjct: 504 PTNVHASEIREAYVVLAWEEPSPRDRAPLTYSLE 537
>gi|144226847 obscurin-like 1 [Homo sapiens]
Length = 1896
Score = 30.8 bits (68), Expect = 5.6
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 565 PGPPVAPDQLETLEAQLKAHLSEPPPGKEGPLTYRFQTCLTMQEVFSQHRRACPGL-TYH 623
PGPP+ + + + + P P E P YR L QEV S+ C +
Sbjct: 518 PGPPILAEMFKGHKNTVLLTWKPPEPAPETPFIYR----LERQEVGSEDWIQCFSIEKAG 573
Query: 624 RIPMPDFCAPREEDF 638
+ +P C P E D+
Sbjct: 574 AVEVPGDCVPSEGDY 588
>gi|27886590 PTK2B protein tyrosine kinase 2 beta isoform a [Homo
sapiens]
Length = 1009
Score = 30.8 bits (68), Expect = 5.6
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 7/145 (4%)
Query: 441 QYPLAFALSFSRWLCAHPELYRLPVTLSSAGPVAPRDLIARGSLREDDLVSPDALSTVRE 500
Q+ + L S P Y PV P+ ++ R S+RE+D + P + ++
Sbjct: 736 QFQVPEGLCASSPTLTSPMEYPSPVNSLHTPPLHRHNVFKRHSMREEDFIQPSSREEAQQ 795
Query: 501 MDVANFRRVPRMPIYGTAQPSAKALGSILAYLTDAKRRLRKVVWVSLREEAVLECDGHTY 560
+ A +V I Q K + +L ++ L +V+ + +++ L +
Sbjct: 796 LWEA--EKVKMRQILDKQQ---KQMVEDYQWLRQEEKSLDPMVY--MNDKSPLTPEKEVG 848
Query: 561 SLRWPGPPVAPDQLETLEAQLKAHL 585
L + GPP P +L Q A+L
Sbjct: 849 YLEFTGPPQKPPRLGAQSIQPTANL 873
>gi|27886586 PTK2B protein tyrosine kinase 2 beta isoform a [Homo
sapiens]
Length = 1009
Score = 30.8 bits (68), Expect = 5.6
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 7/145 (4%)
Query: 441 QYPLAFALSFSRWLCAHPELYRLPVTLSSAGPVAPRDLIARGSLREDDLVSPDALSTVRE 500
Q+ + L S P Y PV P+ ++ R S+RE+D + P + ++
Sbjct: 736 QFQVPEGLCASSPTLTSPMEYPSPVNSLHTPPLHRHNVFKRHSMREEDFIQPSSREEAQQ 795
Query: 501 MDVANFRRVPRMPIYGTAQPSAKALGSILAYLTDAKRRLRKVVWVSLREEAVLECDGHTY 560
+ A +V I Q K + +L ++ L +V+ + +++ L +
Sbjct: 796 LWEA--EKVKMRQILDKQQ---KQMVEDYQWLRQEEKSLDPMVY--MNDKSPLTPEKEVG 848
Query: 561 SLRWPGPPVAPDQLETLEAQLKAHL 585
L + GPP P +L Q A+L
Sbjct: 849 YLEFTGPPQKPPRLGAQSIQPTANL 873
>gi|27886584 PTK2B protein tyrosine kinase 2 beta isoform a [Homo
sapiens]
Length = 1009
Score = 30.8 bits (68), Expect = 5.6
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 7/145 (4%)
Query: 441 QYPLAFALSFSRWLCAHPELYRLPVTLSSAGPVAPRDLIARGSLREDDLVSPDALSTVRE 500
Q+ + L S P Y PV P+ ++ R S+RE+D + P + ++
Sbjct: 736 QFQVPEGLCASSPTLTSPMEYPSPVNSLHTPPLHRHNVFKRHSMREEDFIQPSSREEAQQ 795
Query: 501 MDVANFRRVPRMPIYGTAQPSAKALGSILAYLTDAKRRLRKVVWVSLREEAVLECDGHTY 560
+ A +V I Q K + +L ++ L +V+ + +++ L +
Sbjct: 796 LWEA--EKVKMRQILDKQQ---KQMVEDYQWLRQEEKSLDPMVY--MNDKSPLTPEKEVG 848
Query: 561 SLRWPGPPVAPDQLETLEAQLKAHL 585
L + GPP P +L Q A+L
Sbjct: 849 YLEFTGPPQKPPRLGAQSIQPTANL 873
>gi|4506301 protein tyrosine phosphatase, non-receptor type 9 [Homo
sapiens]
Length = 593
Score = 30.8 bits (68), Expect = 5.6
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 246 DLHVTEEVYKRPLFLQPTYRYHRLPLPEQGSPLEA-QLDAFVSVLRETPSLLQLR----- 299
++H TEE KR Q T+ + L P+ G P A L F+ V+R SL
Sbjct: 448 EIHNTEERQKR----QVTH-FQFLSWPDYGVPSSAASLIDFLRVVRNQQSLAVSNMGARS 502
Query: 300 DAHGPPPALVFSCQMGVGRT 319
P P +V C G+GRT
Sbjct: 503 KGQCPEPPIVVHCSAGIGRT 522
>gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]
Length = 3996
Score = 30.8 bits (68), Expect = 5.6
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 340 PEAAPTQAKPLPMEQFQVIQSFLR-MVPQGRRMVEEVDRAITACA-ELH 386
PE +PT+ + +P E++ ++ F + ++ + R+ + V RAI +C +LH
Sbjct: 3392 PEKSPTKKQEVPEEKYLTLEGFHKFVIDRARQDIRSVWRAILSCGYDLH 3440
>gi|10092691 tight junction protein 3 [Homo sapiens]
Length = 952
Score = 30.4 bits (67), Expect = 7.3
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 627 MPDFCAPREE--DFDQLL--EALRAALSKDPGTGFVFSCLSGQGRTTTAMVVA 675
MP F AP ++ D ++L E A LSKDP GF + G+ R +MVV+
Sbjct: 7 MPIFPAPLDQVADMEELTIWEQHTATLSKDPRRGFGIAISGGRDRPGGSMVVS 59
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 30.4 bits (67), Expect = 7.3
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 724 KEVDAALDTVSETMTPMHYHLREIIICTYRQAKAA---KEAQEMRRLQLRSLQYLERYVC 780
KE + ++S+ +T ++ L+ I + ++A + K+ E + L +Q L V
Sbjct: 1363 KEKKVEISSLSKQLTDLNVQLQNSISLSEKEAAISSLRKQYDEEKCELLDQVQDLSFKVD 1422
Query: 781 LILFNAYLHLEKADSWQRPFSTWMQEVASK 810
+ LE+ D W FS W ++ S+
Sbjct: 1423 TLSKEKISALEQVDDWSNKFSEWKKKAQSR 1452
>gi|66348165 transmembrane protein 209 [Homo sapiens]
Length = 561
Score = 30.4 bits (67), Expect = 7.3
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 769 LRSLQYLERYVCLILFNAYLHLEKADSWQRPFSTWMQEVASKAGIYEI------LNELGF 822
L S Q E + N L L+ DSW F W+ E + EI + +G
Sbjct: 309 LSSKQAAEEVWARVAMNRQL-LDHMDSWTAKFRNWINETILVPLVQEIESVSTQMRRMGC 367
Query: 823 PELESGE 829
PEL+ GE
Sbjct: 368 PELQIGE 374
>gi|38570115 zinc finger protein 362 [Homo sapiens]
Length = 420
Score = 30.4 bits (67), Expect = 7.3
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 564 WPGPPVAPDQLETL------EAQLKAHLSEPP------PGKEGPLTYRFQTCLTMQEVFS 611
WP PP P QL+ L + QL A PP + PL + Q V S
Sbjct: 25 WPPPPTMPSQLDNLVLINKIKEQLMAEKIRPPHLPPTSASSQQPLLVPPAPAESSQAVMS 84
Query: 612 QHR-RACPGLTYHRIPMPD 629
+ + PGL +P PD
Sbjct: 85 LPKLQQVPGLHPQAVPQPD 103
>gi|239753506 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 30.0 bits (66), Expect = 9.5
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 272 PEQGSPLEAQLDAFVSVLRETPSLLQLRDAHGPPPALV 309
P + EA++ V TP LL R AHGPPP V
Sbjct: 82 PSEARHREARVPRRQEVGPRTPRLLGRRSAHGPPPLRV 119
>gi|239748159 PREDICTED: hypothetical protein XP_002346542 [Homo
sapiens]
Length = 246
Score = 30.0 bits (66), Expect = 9.5
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 272 PEQGSPLEAQLDAFVSVLRETPSLLQLRDAHGPPPALV 309
P + EA++ V TP LL R AHGPPP V
Sbjct: 132 PSEARHREARVPRRQEVGPRTPRLLGRRSAHGPPPLRV 169
>gi|239742057 PREDICTED: hypothetical protein XP_002342381 [Homo
sapiens]
Length = 196
Score = 30.0 bits (66), Expect = 9.5
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 272 PEQGSPLEAQLDAFVSVLRETPSLLQLRDAHGPPPALV 309
P + EA++ V TP LL R AHGPPP V
Sbjct: 82 PSEARHREARVPRRQEVGPRTPRLLGRRSAHGPPPLRV 119
>gi|7706757 H(+)-transporting two-sector ATPase [Homo sapiens]
Length = 247
Score = 30.0 bits (66), Expect = 9.5
Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 14/172 (8%)
Query: 687 EVGEEELVSVPDAKFTKGEFQVVMKVVQLLPDGHRVKKEVDAALDTVSETMTPMHYHLRE 746
EV E S+ +AKFT G+F ++ + ++ + ++ A D V+ P+ H E
Sbjct: 60 EVMREAAFSLAEAKFTAGDFSTT-----VIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHE 114
Query: 747 IIICTYRQAKAAKEAQEMRRLQLRSLQYLERYVCLI-LFNAYLHLEKADSWQRPFSTWMQ 805
+Y A+ +++ +L+ + +E V L L +++ L++A ++
Sbjct: 115 -GTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIE 173
Query: 806 EVASKAGIYEILNELGF--PELESGEDQPFSRLRYRWQEQSCSLEPSAPEDL 855
V I I L + EL+ E + F RL+ + QE+ L+ + +DL
Sbjct: 174 HVI----IPRIERTLAYIITELDEREREEFYRLK-KIQEKKKILKEKSEKDL 220
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,335,870
Number of Sequences: 37866
Number of extensions: 1807630
Number of successful extensions: 4380
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4360
Number of HSP's gapped (non-prelim): 25
length of query: 856
length of database: 18,247,518
effective HSP length: 111
effective length of query: 745
effective length of database: 14,044,392
effective search space: 10463072040
effective search space used: 10463072040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.