Search of human proteins with 16418405

Search of human proteins with 16418405

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|16418405 peptidoglycan recognition protein 3 precursor [Homo
sapiens]
         (341 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|16418405 peptidoglycan recognition protein 3 precursor [Homo ...   716   0.0  
gi|56550073 peptidoglycan recognition protein-I-beta precursor [...   477   e-135
gi|4827036 peptidoglycan recognition protein 1 [Homo sapiens]         172   5e-43
gi|156616294 peptidoglycan recognition protein 2 precursor [Homo...   133   2e-31
gi|110431348 deleted in colorectal carcinoma [Homo sapiens]            33   0.48 
gi|221316659 leupaxin isoform 1 [Homo sapiens]                         30   4.1  
gi|4758670 leupaxin isoform 2 [Homo sapiens]                           30   4.1  
gi|40807363 epidermal retinal dehydrogenase 2 [Homo sapiens]           29   6.9  
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [...    28   9.1  
gi|5031973 protein disulfide isomerase A6 [Homo sapiens]               28   9.1  
gi|41349474 PR domain containing 4 [Homo sapiens]                      28   9.1  

>gi|16418405 peptidoglycan recognition protein 3 precursor [Homo
           sapiens]
          Length = 341

 Score =  716 bits (1849), Expect = 0.0
 Identities = 341/341 (100%), Positives = 341/341 (100%)

Query: 1   MGTLPWLLAFFILGLQAWDTPTIVSRKEWGARPLACRALLTLPVAYIITDQLPGMQCQQQ 60
           MGTLPWLLAFFILGLQAWDTPTIVSRKEWGARPLACRALLTLPVAYIITDQLPGMQCQQQ
Sbjct: 1   MGTLPWLLAFFILGLQAWDTPTIVSRKEWGARPLACRALLTLPVAYIITDQLPGMQCQQQ 60

Query: 61  SVCSQMLRGLQSHSVYTIGWCDVAYNFLVGDDGRVYEGVGWNIQGLHTQGYNNISLGIAF 120
           SVCSQMLRGLQSHSVYTIGWCDVAYNFLVGDDGRVYEGVGWNIQGLHTQGYNNISLGIAF
Sbjct: 61  SVCSQMLRGLQSHSVYTIGWCDVAYNFLVGDDGRVYEGVGWNIQGLHTQGYNNISLGIAF 120

Query: 121 FGNKIGSSPSPAALSAAEGLISYAIQKGHLSPRYIQPLLLKEETCLDPQHPVMPRKVCPN 180
           FGNKIGSSPSPAALSAAEGLISYAIQKGHLSPRYIQPLLLKEETCLDPQHPVMPRKVCPN
Sbjct: 121 FGNKIGSSPSPAALSAAEGLISYAIQKGHLSPRYIQPLLLKEETCLDPQHPVMPRKVCPN 180

Query: 181 IIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDI 240
           IIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDI
Sbjct: 181 IIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDI 240

Query: 241 GYHFLVGQDGGVYEGVGWHIQGSHTYGFNDIALGIAFIGYFVEKPPNAAALEAAQDLIQC 300
           GYHFLVGQDGGVYEGVGWHIQGSHTYGFNDIALGIAFIGYFVEKPPNAAALEAAQDLIQC
Sbjct: 241 GYHFLVGQDGGVYEGVGWHIQGSHTYGFNDIALGIAFIGYFVEKPPNAAALEAAQDLIQC 300

Query: 301 AVVEGYLTPNYLLMGHSDVVNILSPGQALYNIISTWPHFKH 341
           AVVEGYLTPNYLLMGHSDVVNILSPGQALYNIISTWPHFKH
Sbjct: 301 AVVEGYLTPNYLLMGHSDVVNILSPGQALYNIISTWPHFKH 341


>gi|56550073 peptidoglycan recognition protein-I-beta precursor
           [Homo sapiens]
          Length = 373

 Score =  477 bits (1227), Expect = e-135
 Identities = 230/372 (61%), Positives = 267/372 (71%), Gaps = 34/372 (9%)

Query: 4   LPWLLAFFILGLQAW----------------------------------DTPTIVSRKEW 29
           LPWLL F  LG+QAW                                  D  T VSRK W
Sbjct: 2   LPWLLVFSALGIQAWGDSSWNKTQAKQVSEGLQYLFENISQLTEKGLPTDVSTTVSRKAW 61

Query: 30  GARPLACRALLTLPVAYIITDQLPGMQCQQQSVCSQMLRGLQSHSVYTIGWCDVAYNFLV 89
           GA  + C   LT PV  ++   +PG++C  Q+VCSQ LR LQ+H V+    CDVAYNFLV
Sbjct: 62  GAEAVGCSIQLTTPVNVLVIHHVPGLECHDQTVCSQRLRELQAHHVHNNSGCDVAYNFLV 121

Query: 90  GDDGRVYEGVGWNIQGLHTQGYNNISLGIAFFGNKIGSSPSPAALSAAEGLISYAIQKGH 149
           GDDGRVYEGVGWNIQG+HTQGYNNISLG AFFG K G SPSPAALSA E LI+YA+QKGH
Sbjct: 122 GDDGRVYEGVGWNIQGVHTQGYNNISLGFAFFGTKKGHSPSPAALSAMENLITYAVQKGH 181

Query: 150 LSPRYIQPLLLKEETCLDPQHPVMPRKVCPNIIKRSAWEARETHCPKMNLPAKYVIIIHT 209
           LS  Y+QPLL K E CL P+     +K CP ++ RS W ARETHCP+M LPAKY IIIHT
Sbjct: 182 LSSSYVQPLLGKGENCLAPRQKTSLKKACPGVVPRSVWGARETHCPRMTLPAKYGIIIHT 241

Query: 210 AGTSCTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHTYGFN 269
           AG +C +S +C+ +VR+IQSF++D    CDIGY+FLVGQDG +YEGVGW++QGS T G++
Sbjct: 242 AGRTCNISDECRLLVRDIQSFYIDRLKSCDIGYNFLVGQDGAIYEGVGWNVQGSSTPGYD 301

Query: 270 DIALGIAFIGYFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMGHSDVVNILSPGQAL 329
           DIALGI F+G F   PPNAAALEAAQDLIQCA+V+GYLTPNYLL+GHSDV   LSPGQAL
Sbjct: 302 DIALGITFMGTFTGIPPNAAALEAAQDLIQCAMVKGYLTPNYLLVGHSDVARTLSPGQAL 361

Query: 330 YNIISTWPHFKH 341
           YNIISTWPHFKH
Sbjct: 362 YNIISTWPHFKH 373


>gi|4827036 peptidoglycan recognition protein 1 [Homo sapiens]
          Length = 196

 Score =  172 bits (435), Expect = 5e-43
 Identities = 77/186 (41%), Positives = 120/186 (64%), Gaps = 6/186 (3%)

Query: 157 PLLLKEETCLDPQHPVMPRKVCPNIIKRSAWEARETHCPK-MNLPAKYVIIIHTAGTSCT 215
           P LL+     + + P      C  I+ R+ W+A  + C + ++LP +YV++ HTAG+SC 
Sbjct: 13  PSLLRLGAAQETEDPAC----CSPIVPRNEWKALASECAQHLSLPLRYVVVSHTAGSSCN 68

Query: 216 VSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHT-YGFNDIALG 274
               CQ   RN+Q +HM T  +CD+GY+FL+G+DG VYEG GW+  G+H+ + +N +++G
Sbjct: 69  TPASCQQQARNVQHYHMKTLGWCDVGYNFLIGEDGLVYEGRGWNFTGAHSGHLWNPMSIG 128

Query: 275 IAFIGYFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMGHSDVVNILSPGQALYNIIS 334
           I+F+G ++++ P   A+ AAQ L+ C V +G L  NY+L GH DV   LSPG  LY++I 
Sbjct: 129 ISFMGNYMDRVPTPQAIRAAQGLLACGVAQGALRSNYVLKGHRDVQRTLSPGNQLYHLIQ 188

Query: 335 TWPHFK 340
            WPH++
Sbjct: 189 NWPHYR 194



 Score =  124 bits (311), Expect = 1e-28
 Identities = 56/134 (41%), Positives = 81/134 (60%), Gaps = 1/134 (0%)

Query: 23  IVSRKEWGARPLACRALLTLPVAYIITDQLPGMQCQQQSVCSQMLRGLQSHSVYTIGWCD 82
           IV R EW A    C   L+LP+ Y++     G  C   + C Q  R +Q + + T+GWCD
Sbjct: 33  IVPRNEWKALASECAQHLSLPLRYVVVSHTAGSSCNTPASCQQQARNVQHYHMKTLGWCD 92

Query: 83  VAYNFLVGDDGRVYEGVGWNIQGLHT-QGYNNISLGIAFFGNKIGSSPSPAALSAAEGLI 141
           V YNFL+G+DG VYEG GWN  G H+   +N +S+GI+F GN +   P+P A+ AA+GL+
Sbjct: 93  VGYNFLIGEDGLVYEGRGWNFTGAHSGHLWNPMSIGISFMGNYMDRVPTPQAIRAAQGLL 152

Query: 142 SYAIQKGHLSPRYI 155
           +  + +G L   Y+
Sbjct: 153 ACGVAQGALRSNYV 166


>gi|156616294 peptidoglycan recognition protein 2 precursor [Homo
           sapiens]
          Length = 576

 Score =  133 bits (335), Expect = 2e-31
 Identities = 71/167 (42%), Positives = 94/167 (56%), Gaps = 5/167 (2%)

Query: 178 CPNIIKRSAWEARETHC-PKM-NLPAKYVIIIHT--AGTSCTVSTDCQTVVRNIQSFHMD 233
           CP I  R  W A      PK+  LP  ++ + HT      CT  T C   +R++Q +H D
Sbjct: 379 CPAIHPRCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCTDFTRCAANMRSMQRYHQD 438

Query: 234 TRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHTYGFNDIALGIAFIGYFVEKPPNAAALEA 293
           T+ + DIGY F+VG DG VYEG GWH  G+HT G N    G+A +G +    P  AAL  
Sbjct: 439 TQGWGDIGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGVAIVGNYTAALPTEAALRT 498

Query: 294 AQD-LIQCAVVEGYLTPNYLLMGHSDVVNILSPGQALYNIISTWPHF 339
            +D L  CAV  G L P+Y L+GH  +V    PG AL++++ TWPHF
Sbjct: 499 VRDTLPSCAVRAGLLRPDYALLGHRQLVRTDCPGDALFDLLRTWPHF 545



 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 4/138 (2%)

Query: 21  PTIVSRKEWGARPLACRA-LLTLPVAYIITDQ--LPGMQCQQQSVCSQMLRGLQSHSVYT 77
           P I  R  WGA P   R  LL LP+ ++      +P   C   + C+  +R +Q +   T
Sbjct: 380 PAIHPRCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCTDFTRCAANMRSMQRYHQDT 439

Query: 78  IGWCDVAYNFLVGDDGRVYEGVGWNIQGLHTQGYNNISLGIAFFGNKIGSSPSPAAL-SA 136
            GW D+ Y+F+VG DG VYEG GW+  G HT G+N+   G+A  GN   + P+ AAL + 
Sbjct: 440 QGWGDIGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGVAIVGNYTAALPTEAALRTV 499

Query: 137 AEGLISYAIQKGHLSPRY 154
            + L S A++ G L P Y
Sbjct: 500 RDTLPSCAVRAGLLRPDY 517


>gi|110431348 deleted in colorectal carcinoma [Homo sapiens]
          Length = 1447

 Score = 32.7 bits (73), Expect = 0.48
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 280 YFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMGHSDVVNILSPGQAL 329
           YF+++P N  A+E    +++C  V GY  P++  +   +V+ + S   +L
Sbjct: 241 YFLQRPSNVVAIEGKDAVLECC-VSGYPPPSFTWLRGEEVIQLRSKKYSL 289


>gi|221316659 leupaxin isoform 1 [Homo sapiens]
          Length = 391

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 214 CTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGVGWHIQG 262
           C V  DC T       F +D R FC++ YH    + G +  G G  I G
Sbjct: 298 CFVCGDCFTSFSTGSFFELDGRPFCELHYHH---RRGTLCHGCGQPITG 343


>gi|4758670 leupaxin isoform 2 [Homo sapiens]
          Length = 386

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 214 CTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGVGWHIQG 262
           C V  DC T       F +D R FC++ YH    + G +  G G  I G
Sbjct: 293 CFVCGDCFTSFSTGSFFELDGRPFCELHYHH---RRGTLCHGCGQPITG 338


>gi|40807363 epidermal retinal dehydrogenase 2 [Homo sapiens]
          Length = 309

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 130 SPAALSAAEGLISYAIQKGHLSPRYIQPLLLKEETCLDPQHPVMPRKVCPNIIKRSAWEA 189
           S A LS   GL  Y   K   +  + + + +  ET +  Q  +    VCP  IK   +E 
Sbjct: 177 SSAGLSGVNGLADYCASK-FAAFGFAESVFV--ETFVQKQKGIKTTIVCPFFIKTGMFEG 233

Query: 190 RETHCPKM--NLPAKYVI 205
             T CP +   L  KY +
Sbjct: 234 CTTGCPSLLPILEPKYAV 251


>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
            sapiens]
          Length = 3969

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 304  EGYLTPNYLLMGHSDVVNILSP 325
            EG++TP++ + GH D  +I SP
Sbjct: 2986 EGHMTPDHFIQGHMDADHISSP 3007


>gi|5031973 protein disulfide isomerase A6 [Homo sapiens]
          Length = 440

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 100 GWNIQGLHTQGYNNISLGIAFFGNKIGSSPSPAALSAAEGLISYAIQKGHLSPRYIQPLL 159
           GW       Q     +LGI  FG      P+ AA++A +  + +A+ KG  S + I   L
Sbjct: 333 GWLWTEAGAQSELETALGIGGFGY-----PAMAAINARK--MKFALLKGSFSEQGINEFL 385

Query: 160 LKEETCLDPQHPVMPRKVCPNIIKRSAWEARETHCP 195
            +         PV      P I++R  W+ R+   P
Sbjct: 386 RELSFGRGSTAPV-GGGAFPTIVEREPWDGRDGELP 420


>gi|41349474 PR domain containing 4 [Homo sapiens]
          Length = 801

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 33  PLACRALLTLPVAYIITDQLPGMQCQQQS-------VCSQMLRGLQSHSVYTIGWCDVAY 85
           P+  RA L+LP   ++   + G +    +        C   L G QSHS+    W D A 
Sbjct: 401 PIESRARLSLPKQLVLRQSIVGAEVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWTDKAV 460

Query: 86  NFL 88
           N +
Sbjct: 461 NHI 463


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.139    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,097,204
Number of Sequences: 37866
Number of extensions: 639533
Number of successful extensions: 1065
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 14
length of query: 341
length of database: 18,247,518
effective HSP length: 103
effective length of query: 238
effective length of database: 14,347,320
effective search space: 3414662160
effective search space used: 3414662160
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.