BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|16306502 F-box only protein 21 isoform 1 [Homo sapiens] (628 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|16306502 F-box only protein 21 isoform 1 [Homo sapiens] 1283 0.0 gi|16306500 F-box only protein 21 isoform 2 [Homo sapiens] 1262 0.0 gi|11545739 F-box and WD repeat domain containing 4 [Homo sapiens] 32 1.8 gi|30039694 zinc finger protein 598 [Homo sapiens] 32 2.3 gi|40217843 cartilage oligomeric matrix protein precursor [Homo ... 31 3.9 gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 30 8.8 >gi|16306502 F-box only protein 21 isoform 1 [Homo sapiens] Length = 628 Score = 1283 bits (3319), Expect = 0.0 Identities = 628/628 (100%), Positives = 628/628 (100%) Query: 1 MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR 60 MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR Sbjct: 1 MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR 60 Query: 61 RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR 120 RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR Sbjct: 61 RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR 120 Query: 121 FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN 180 FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN Sbjct: 121 FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN 180 Query: 181 NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP 240 NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP Sbjct: 181 NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP 240 Query: 241 SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI 300 SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI Sbjct: 241 SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI 300 Query: 301 PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV 360 PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV Sbjct: 301 PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV 360 Query: 361 KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP 420 KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP Sbjct: 361 KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP 420 Query: 421 DQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIE 480 DQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIE Sbjct: 421 DQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIE 480 Query: 481 RKKEEVGVEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVH 540 RKKEEVGVEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVH Sbjct: 481 RKKEEVGVEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVH 540 Query: 541 SLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAEL 600 SLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAEL Sbjct: 541 SLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAEL 600 Query: 601 EIRYPEDLEFVYETVQNIYSAKKENIDE 628 EIRYPEDLEFVYETVQNIYSAKKENIDE Sbjct: 601 EIRYPEDLEFVYETVQNIYSAKKENIDE 628 >gi|16306500 F-box only protein 21 isoform 2 [Homo sapiens] Length = 621 Score = 1262 bits (3265), Expect = 0.0 Identities = 621/628 (98%), Positives = 621/628 (98%), Gaps = 7/628 (1%) Query: 1 MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR 60 MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR Sbjct: 1 MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR 60 Query: 61 RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR 120 RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR Sbjct: 61 RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR 120 Query: 121 FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN 180 FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN Sbjct: 121 FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN 180 Query: 181 NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP 240 NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP Sbjct: 181 NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP 240 Query: 241 SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI 300 SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI Sbjct: 241 SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI 300 Query: 301 PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV 360 PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV Sbjct: 301 PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV 360 Query: 361 KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP 420 KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP Sbjct: 361 KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP 420 Query: 421 DQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIE 480 DQVQLLLLQARLYFHLGIWPE KVLDILQHIQTLDPGQHGAVGYLVQHTLEHIE Sbjct: 421 DQVQLLLLQARLYFHLGIWPE-------KVLDILQHIQTLDPGQHGAVGYLVQHTLEHIE 473 Query: 481 RKKEEVGVEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVH 540 RKKEEVGVEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVH Sbjct: 474 RKKEEVGVEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVH 533 Query: 541 SLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAEL 600 SLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAEL Sbjct: 534 SLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAEL 593 Query: 601 EIRYPEDLEFVYETVQNIYSAKKENIDE 628 EIRYPEDLEFVYETVQNIYSAKKENIDE Sbjct: 594 EIRYPEDLEFVYETVQNIYSAKKENIDE 621 >gi|11545739 F-box and WD repeat domain containing 4 [Homo sapiens] Length = 412 Score = 32.0 bits (71), Expect = 1.8 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Query: 3 AAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCRRL 62 AAA E A E AA AG L LP E+L +L C L +GR++ CR L Sbjct: 2 AAAAGEEEEEEEAARESAARPAAG-PALWRLPEELL--LLICSYLDMRALGRLAQVCRWL 58 Query: 63 RELCQSSGKVWK 74 R S +W+ Sbjct: 59 RRF-TSCDLLWR 69 >gi|30039694 zinc finger protein 598 [Homo sapiens] Length = 904 Score = 31.6 bits (70), Expect = 2.3 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 16/72 (22%) Query: 1 MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGR----VS 56 MAAA A AAPE G SC +LCCG L A +GR V Sbjct: 1 MAAAGGAEGRRAALEAAAAAAPERGGGSC-----------VLCCGDLEATALGRCDHPVC 49 Query: 57 STC-RRLRELCQ 67 C ++R LC+ Sbjct: 50 YRCSTKMRVLCE 61 >gi|40217843 cartilage oligomeric matrix protein precursor [Homo sapiens] Length = 757 Score = 30.8 bits (68), Expect = 3.9 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 6/78 (7%) Query: 118 SKRFFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQK 177 S R+F +H P G+ + EGPE+ + +V M G + + + + I++ + + Sbjct: 681 SYRWFLQHRPQVGYIRVRFYEGPELVADSNVVLDTTMRGGRLGVFCFSQENIIWANLRYR 740 Query: 178 ILNNLKAFLQQPDDYESY 195 + + P+DYE++ Sbjct: 741 CNDTI------PEDYETH 752 >gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo sapiens] Length = 1130 Score = 29.6 bits (65), Expect = 8.8 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 20 AAPEVAGLSCLVNLPGEV--LEYILCCGSLTAADIGRVSSTCRRLRELC 66 +AP + GL CL+ L G V + + G+L + R+SS R LC Sbjct: 62 SAPHLPGLMCLLRLHGSVGGAQNLSALGALVSLSNARLSSIKTRFEGLC 110 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.322 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,311,758 Number of Sequences: 37866 Number of extensions: 1029087 Number of successful extensions: 2144 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 2140 Number of HSP's gapped (non-prelim): 6 length of query: 628 length of database: 18,247,518 effective HSP length: 108 effective length of query: 520 effective length of database: 14,157,990 effective search space: 7362154800 effective search space used: 7362154800 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.