Search of human proteins with 16306500

Search of human proteins with 16306500

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|16306500 F-box only protein 21 isoform 2 [Homo sapiens]
         (621 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|16306500 F-box only protein 21 isoform 2 [Homo sapiens]           1269   0.0  
gi|16306502 F-box only protein 21 isoform 1 [Homo sapiens]           1262   0.0  
gi|11545739 F-box and WD repeat domain containing 4 [Homo sapiens]     32   1.7  
gi|30039694 zinc finger protein 598 [Homo sapiens]                     32   2.3  
gi|40217843 cartilage oligomeric matrix protein precursor [Homo ...    31   3.9  
gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Ho...    30   6.6  
gi|155030232 proline, glutamic acid and leucine rich protein 1 [...    30   8.6  

>gi|16306500 F-box only protein 21 isoform 2 [Homo sapiens]
          Length = 621

 Score = 1269 bits (3283), Expect = 0.0
 Identities = 621/621 (100%), Positives = 621/621 (100%)

Query: 1   MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR 60
           MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR
Sbjct: 1   MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR 60

Query: 61  RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR 120
           RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR
Sbjct: 61  RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR 120

Query: 121 FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN 180
           FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN
Sbjct: 121 FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN 180

Query: 181 NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP 240
           NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP
Sbjct: 181 NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP 240

Query: 241 SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI 300
           SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI
Sbjct: 241 SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI 300

Query: 301 PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV 360
           PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV
Sbjct: 301 PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV 360

Query: 361 KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP 420
           KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP
Sbjct: 361 KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP 420

Query: 421 DQVQLLLLQARLYFHLGIWPEKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVG 480
           DQVQLLLLQARLYFHLGIWPEKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVG
Sbjct: 421 DQVQLLLLQARLYFHLGIWPEKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERKKEEVG 480

Query: 481 VEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHH 540
           VEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHH
Sbjct: 481 VEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHH 540

Query: 541 QPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPED 600
           QPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPED
Sbjct: 541 QPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAELEIRYPED 600

Query: 601 LEFVYETVQNIYSAKKENIDE 621
           LEFVYETVQNIYSAKKENIDE
Sbjct: 601 LEFVYETVQNIYSAKKENIDE 621


>gi|16306502 F-box only protein 21 isoform 1 [Homo sapiens]
          Length = 628

 Score = 1262 bits (3265), Expect = 0.0
 Identities = 621/628 (98%), Positives = 621/628 (98%), Gaps = 7/628 (1%)

Query: 1   MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR 60
           MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR
Sbjct: 1   MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCR 60

Query: 61  RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR 120
           RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR
Sbjct: 61  RLRELCQSSGKVWKEQFRVRWPSLMKHYSPTDYVNWLEEYKVRQKAGLEARKIVASFSKR 120

Query: 121 FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN 180
           FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN
Sbjct: 121 FFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQKILN 180

Query: 181 NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP 240
           NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP
Sbjct: 181 NLKAFLQQPDDYESYLEGAVYIDQYCNPLSDISLKDIQAQIDSIVELVCKTLRGINSRHP 240

Query: 241 SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI 300
           SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI
Sbjct: 241 SLAFKAGESSMIMEIELQSQVLDAMNYVLYDQLKFKGNRMDYYNALNLYMHQVLIRRTGI 300

Query: 301 PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV 360
           PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV
Sbjct: 301 PISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTV 360

Query: 361 KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP 420
           KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP
Sbjct: 361 KECEYLIGQHVTAALYGVVNVKKVLQRMVGNLLSLGKREGIDQSYQLLRDSLDLYLAMYP 420

Query: 421 DQVQLLLLQARLYFHLGIWPE-------KVLDILQHIQTLDPGQHGAVGYLVQHTLEHIE 473
           DQVQLLLLQARLYFHLGIWPE       KVLDILQHIQTLDPGQHGAVGYLVQHTLEHIE
Sbjct: 421 DQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIE 480

Query: 474 RKKEEVGVEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVH 533
           RKKEEVGVEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVH
Sbjct: 481 RKKEEVGVEVKLRSDEKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVH 540

Query: 534 SLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAEL 593
           SLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAEL
Sbjct: 541 SLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYFSEFTGTHYIPNAEL 600

Query: 594 EIRYPEDLEFVYETVQNIYSAKKENIDE 621
           EIRYPEDLEFVYETVQNIYSAKKENIDE
Sbjct: 601 EIRYPEDLEFVYETVQNIYSAKKENIDE 628


>gi|11545739 F-box and WD repeat domain containing 4 [Homo
          sapiens]
          Length = 412

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 3  AAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGRVSSTCRRL 62
          AAA     E   A  E AA   AG   L  LP E+L  +L C  L    +GR++  CR L
Sbjct: 2  AAAAGEEEEEEEAARESAARPAAG-PALWRLPEELL--LLICSYLDMRALGRLAQVCRWL 58

Query: 63 RELCQSSGKVWK 74
          R    S   +W+
Sbjct: 59 RRF-TSCDLLWR 69


>gi|30039694 zinc finger protein 598 [Homo sapiens]
          Length = 904

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 16/72 (22%)

Query: 1  MAAAAVDSAMEVVPALAEEAAPEVAGLSCLVNLPGEVLEYILCCGSLTAADIGR----VS 56
          MAAA            A  AAPE  G SC           +LCCG L A  +GR    V 
Sbjct: 1  MAAAGGAEGRRAALEAAAAAAPERGGGSC-----------VLCCGDLEATALGRCDHPVC 49

Query: 57 STC-RRLRELCQ 67
            C  ++R LC+
Sbjct: 50 YRCSTKMRVLCE 61


>gi|40217843 cartilage oligomeric matrix protein precursor [Homo
           sapiens]
          Length = 757

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 118 SKRFFSEHVPCNGFSDIENLEGPEIFFEDELVCILNMEGRKALTWKYYAKKILYYLRQQK 177
           S R+F +H P  G+  +   EGPE+  +  +V    M G +   + +  + I++   + +
Sbjct: 681 SYRWFLQHRPQVGYIRVRFYEGPELVADSNVVLDTTMRGGRLGVFCFSQENIIWANLRYR 740

Query: 178 ILNNLKAFLQQPDDYESY 195
             + +      P+DYE++
Sbjct: 741 CNDTI------PEDYETH 752


>gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Homo
           sapiens]
          Length = 864

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 405 YQLLRDSLDLYLAMYPDQVQLLLLQARLYFHLGIWPE--KVLDILQHIQTLD 454
           Y L  D ++  +A  P  ++L  ++A++Y H+G   E  K +D  Q + T D
Sbjct: 390 YSLALDYINAAIASTPTLIELFYMKAKIYKHIGNLKEAAKWMDEAQSLDTAD 441


>gi|155030232 proline, glutamic acid and leucine rich protein 1
           [Homo sapiens]
          Length = 1130

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 20  AAPEVAGLSCLVNLPGEV--LEYILCCGSLTAADIGRVSSTCRRLRELC 66
           +AP + GL CL+ L G V   + +   G+L +    R+SS   R   LC
Sbjct: 62  SAPHLPGLMCLLRLHGSVGGAQNLSALGALVSLSNARLSSIKTRFEGLC 110


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,080,713
Number of Sequences: 37866
Number of extensions: 1023715
Number of successful extensions: 2138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2134
Number of HSP's gapped (non-prelim): 7
length of query: 621
length of database: 18,247,518
effective HSP length: 108
effective length of query: 513
effective length of database: 14,157,990
effective search space: 7263048870
effective search space used: 7263048870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.