Search of human proteins with 157388949

Search of human proteins with 157388949

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|157388949 elongation of very long chain fatty acids-like 7
[Homo sapiens]
         (281 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|157388949 elongation of very long chain fatty acids-like 7 [H...   595   e-170
gi|157388947 elongation of very long chain fatty acids-like 7 [H...   595   e-170
gi|13489093 elongation of very long chain fatty acids-like 1 [Ho...   358   2e-99
gi|12232379 elongation of very long chain fatty acids-like 4 [Ho...   240   9e-64
gi|157388945 elongation of very long chain fatty acids-like 2 [H...   199   2e-51
gi|11464975 elongation of very long chain fatty acids-like 5 [Ho...   179   3e-45
gi|195539343 elongation of very long chain fatty acids-like 6 [H...    84   1e-16
gi|13129088 elongation of very long chain fatty acids-like 6 [Ho...    84   1e-16
gi|23097310 elongation of very long chain fatty acids like 3 [Ho...    81   1e-15
gi|46409292 dpy-19-like 3 [Homo sapiens]                               29   5.3  
gi|49533617 sterol O-acyltransferase 1 [Homo sapiens]                  28   6.9  
gi|194018476 TBC1 domain family, member 2B isoform b [Homo sapiens]    28   6.9  
gi|51094101 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...    28   9.0  
gi|164419743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1...    28   9.0  

>gi|157388949 elongation of very long chain fatty acids-like 7 [Homo
           sapiens]
          Length = 281

 Score =  595 bits (1535), Expect = e-170
 Identities = 281/281 (100%), Positives = 281/281 (100%)

Query: 1   MAFSDLTSRTVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRK 60
           MAFSDLTSRTVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRK
Sbjct: 1   MAFSDLTSRTVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRK 60

Query: 61  PFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLY 120
           PFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLY
Sbjct: 61  PFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLY 120

Query: 121 YFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAV 180
           YFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAV
Sbjct: 121 YFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAV 180

Query: 181 HVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFAC 240
           HVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFAC
Sbjct: 181 HVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFAC 240

Query: 241 IIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVKNGTCKNKDN 281
           IIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVKNGTCKNKDN
Sbjct: 241 IIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVKNGTCKNKDN 281


>gi|157388947 elongation of very long chain fatty acids-like 7 [Homo
           sapiens]
          Length = 281

 Score =  595 bits (1535), Expect = e-170
 Identities = 281/281 (100%), Positives = 281/281 (100%)

Query: 1   MAFSDLTSRTVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRK 60
           MAFSDLTSRTVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRK
Sbjct: 1   MAFSDLTSRTVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRK 60

Query: 61  PFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLY 120
           PFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLY
Sbjct: 61  PFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLY 120

Query: 121 YFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAV 180
           YFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAV
Sbjct: 121 YFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAV 180

Query: 181 HVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFAC 240
           HVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFAC
Sbjct: 181 HVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFAC 240

Query: 241 IIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVKNGTCKNKDN 281
           IIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVKNGTCKNKDN
Sbjct: 241 IIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVKNGTCKNKDN 281


>gi|13489093 elongation of very long chain fatty acids-like 1 [Homo
           sapiens]
          Length = 279

 Score =  358 bits (920), Expect = 2e-99
 Identities = 159/275 (57%), Positives = 212/275 (77%), Gaps = 4/275 (1%)

Query: 11  VHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMIT 70
           V+LY   +K ADPR++ + LM SPL  T +L  YVYFV SLGP++M NRKPF+L+  MI 
Sbjct: 5   VNLYQEVMKHADPRIQGYPLMGSPLLMTSILLTYVYFVLSLGPRIMANRKPFQLRGFMIV 64

Query: 71  YNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELLD 130
           YNF +V  S+Y+ YEF+MSGW   Y++RCD VDYS SP ALRM R  WL+ FSKFIEL+D
Sbjct: 65  YNFSLVALSLYIVYEFLMSGWLSTYTWRCDPVDYSNSPEALRMVRVAWLFLFSKFIELMD 124

Query: 131 TIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYGL 190
           T+ F+LRKK+ QVTFLHVFHH+++PW+WW+GVK A GG+G+FHA++N++VHV+MY YYGL
Sbjct: 125 TVIFILRKKDGQVTFLHVFHHSVLPWSWWWGVKIAPGGMGSFHAMINSSVHVIMYLYYGL 184

Query: 191 SALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFACIIMSYSFMFL 250
           SA GP  Q YLWWKK++T++QL+QFV+V++HISQ++FM  C YQ+PV   +I  Y  +F 
Sbjct: 185 SAFGPVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMSSCNYQYPVIIHLIWMYGTIFF 244

Query: 251 LLFLHFWYRAYTKGQRLPKTVKN----GTCKNKDN 281
           +LF +FWY +YTKG+RLP+ ++     G  K K N
Sbjct: 245 MLFSNFWYHSYTKGKRLPRALQQNGAPGIAKVKAN 279


>gi|12232379 elongation of very long chain fatty acids-like 4 [Homo
           sapiens]
          Length = 314

 Score =  240 bits (613), Expect = 9e-64
 Identities = 124/272 (45%), Positives = 171/272 (62%), Gaps = 7/272 (2%)

Query: 10  TVHLYDNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMI 69
           TV  Y      AD RVE+W LM SP P   +   Y+ FV  LGPK M++R+PF+++  +I
Sbjct: 22  TVEFYRWTWSIADKRVENWPLMQSPWPTLSISTLYLLFVW-LGPKWMKDREPFQMRLVLI 80

Query: 70  TYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELL 129
            YNF +VL ++++  E  M  +  GYS+ C  VDYS +   +R+A   W Y+ SK +E L
Sbjct: 81  IYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVHEVRIAAALWWYFVSKGVEYL 140

Query: 130 DTIFFVLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYG 189
           DT+FF+LRKKN+QV+FLHV+HH  M   WW G+K+ AGG   F A LN+ +HV+MYSYYG
Sbjct: 141 DTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSYYG 200

Query: 190 LSALGPAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFA-CIIMSYSFM 248
           L+A GP  QKYLWWK+YLT LQL+QF +   H +   +  DC   FP +    +++Y+  
Sbjct: 201 LTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSLY-TDC--PFPKWMHWALIAYAIS 257

Query: 249 FLLLFLHFWYRAY--TKGQRLPKTVKNGTCKN 278
           F+ LFL+F+ R Y   K  +  KT  NG   N
Sbjct: 258 FIFLFLNFYIRTYKEPKKPKAGKTAMNGISAN 289


>gi|157388945 elongation of very long chain fatty acids-like 2 [Homo
           sapiens]
          Length = 296

 Score =  199 bits (507), Expect = 2e-51
 Identities = 115/273 (42%), Positives = 152/273 (55%), Gaps = 17/273 (6%)

Query: 15  DNWIKDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMITYNFF 74
           DN     D RV  W ++ S LP   L   Y+  +  LG K M+NR    L+  +  YN  
Sbjct: 16  DNMFGPRDSRVRGWFMLDSYLPTFFLTVMYLLSIW-LGNKYMKNRPALSLRGILTLYNLG 74

Query: 75  IVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELLDTIFF 134
           I L S YM  E ++S W  GY+ +C  +  S     +R+A+  W YYFSK +E LDTIFF
Sbjct: 75  ITLLSAYMLAELILSTWEGGYNLQCQDLT-SAGEADIRVAKVLWWYYFSKSVEFLDTIFF 133

Query: 135 VLRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYGLSALG 194
           VLRKK SQ+TFLHV+HH  M   WW  + +   G   F   LN+ +H++MYSYYGLS   
Sbjct: 134 VLRKKTSQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSVF- 192

Query: 195 PAYQKYLWWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPVFACIIMSYSFM--FLLL 252
           P+  KYLWWKKYLT  QLVQFV+   H +    ++ C +    F C+I   S+M   ++L
Sbjct: 193 PSMHKYLWWKKYLTQAQLVQFVLTITH-TMSAVVKPCGFP---FGCLIFQSSYMLTLVIL 248

Query: 253 FLHFWYRAYTKG------QRLP--KTVKNGTCK 277
           FL+F+ + Y K       Q  P  K VKNG  K
Sbjct: 249 FLNFYVQTYRKKPMKKDMQEPPAGKEVKNGFSK 281


>gi|11464975 elongation of very long chain fatty acids-like 5 [Homo
           sapiens]
          Length = 299

 Score =  179 bits (453), Expect = 3e-45
 Identities = 96/247 (38%), Positives = 137/247 (55%), Gaps = 15/247 (6%)

Query: 22  DPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMITYNFFIVLFSVY 81
           D RV+ W L+ + +P  I    Y+  V  LGPK M N++PF  +  ++ YN  + L S+Y
Sbjct: 20  DTRVKGWFLLDNYIPTFICSVIYLLIVW-LGPKYMRNKQPFSCRGILVVYNLGLTLLSLY 78

Query: 82  MCYEFVMSGWGIGYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELLDTIFFVLRKKNS 141
           M  E V   W   Y+F C     +   + +++ R  W YYFSK IE +DT FF+LRK N 
Sbjct: 79  MFCELVTGVWEGKYNFFCQGTR-TAGESDMKIIRVLWWYYFSKLIEFMDTFFFILRKNNH 137

Query: 142 QVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYL 201
           Q+T LHV+HH  M   WWF + +   G   F A LN+ +HV+MYSYYGLS++ P+ + YL
Sbjct: 138 QITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSV-PSMRPYL 196

Query: 202 WWKKYLTSLQLVQFVIVAIHISQFFFMEDCKYQFPV-----FACIIMSYSFMFLLLFLHF 256
           WWKKY+T  QL+QFV+  I  S       C   +P      +    + Y    + LF +F
Sbjct: 197 WWKKYITQGQLLQFVLTIIQTS-------CGVIWPCTFPLGWLYFQIGYMISLIALFTNF 249

Query: 257 WYRAYTK 263
           + + Y K
Sbjct: 250 YIQTYNK 256


>gi|195539343 elongation of very long chain fatty acids-like 6 [Homo
           sapiens]
          Length = 265

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 77/236 (32%), Positives = 119/236 (50%), Gaps = 34/236 (14%)

Query: 52  GPKLMENRKPFELKKAMITYNFFIVLFSV--------YMCYEFVMSGWGIGYSFRCDIVD 103
           G  LM  R  FEL+K ++ ++  + +FS+        YM Y  ++   G+  S  CD   
Sbjct: 47  GRHLMNKRAKFELRKPLVLWSLTLAVFSIFGALRTGAYMVY--ILMTKGLKQSV-CDQGF 103

Query: 104 YSRSPTALRMARTCWLYYF--SKFIELLDTIFFVLRKKNSQVTFLHVFHH-TIMPWTWWF 160
           Y+   +        W Y F  SK  EL DTIF +LRK+  ++ FLH +HH T++ ++W+ 
Sbjct: 104 YNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYS 155

Query: 161 GVKFAAGGLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVI-VA 219
                AGG G F  + N  VH VMYSYY L A G  ++    +  ++T  Q+ Q ++   
Sbjct: 156 YKDMVAGG-GWFMTM-NYGVHAVMYSYYALRAAG--FRVSRKFAMFITLSQITQMLMGCV 211

Query: 220 IHISQFFFM--EDCKYQFP-VFACIIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVK 272
           ++   F +M  + C   F  +F   +M  S  +L+LF HF++ AY    R  KT K
Sbjct: 212 VNYLVFCWMQHDQCHSHFQNIFWSSLMYLS--YLVLFCHFFFEAYIGKMR--KTTK 263


>gi|13129088 elongation of very long chain fatty acids-like 6 [Homo
           sapiens]
          Length = 265

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 77/236 (32%), Positives = 119/236 (50%), Gaps = 34/236 (14%)

Query: 52  GPKLMENRKPFELKKAMITYNFFIVLFSV--------YMCYEFVMSGWGIGYSFRCDIVD 103
           G  LM  R  FEL+K ++ ++  + +FS+        YM Y  ++   G+  S  CD   
Sbjct: 47  GRHLMNKRAKFELRKPLVLWSLTLAVFSIFGALRTGAYMVY--ILMTKGLKQSV-CDQGF 103

Query: 104 YSRSPTALRMARTCWLYYF--SKFIELLDTIFFVLRKKNSQVTFLHVFHH-TIMPWTWWF 160
           Y+   +        W Y F  SK  EL DTIF +LRK+  ++ FLH +HH T++ ++W+ 
Sbjct: 104 YNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYS 155

Query: 161 GVKFAAGGLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYLWWKKYLTSLQLVQFVI-VA 219
                AGG G F  + N  VH VMYSYY L A G  ++    +  ++T  Q+ Q ++   
Sbjct: 156 YKDMVAGG-GWFMTM-NYGVHAVMYSYYALRAAG--FRVSRKFAMFITLSQITQMLMGCV 211

Query: 220 IHISQFFFM--EDCKYQFP-VFACIIMSYSFMFLLLFLHFWYRAYTKGQRLPKTVK 272
           ++   F +M  + C   F  +F   +M  S  +L+LF HF++ AY    R  KT K
Sbjct: 212 VNYLVFCWMQHDQCHSHFQNIFWSSLMYLS--YLVLFCHFFFEAYIGKMR--KTTK 263


>gi|23097310 elongation of very long chain fatty acids like 3 [Homo
           sapiens]
          Length = 270

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 73/265 (27%), Positives = 123/265 (46%), Gaps = 34/265 (12%)

Query: 19  KDADPRVEDWLLMSSPLPQTILLGFYVYFVTSLGPKLMENRKPFELKKAMITYNFFIVLF 78
           KD  P  E++   S P+    L+      + ++G   M+ RK F L+  +I ++F + +F
Sbjct: 24  KDMRPFFEEYWATSFPIALIYLV------LIAVGQNYMKERKGFNLQGPLILWSFCLAIF 77

Query: 79  SVYMCYEFVMSGWGI--------GYSFRCDIVDYSRSPTALRMARTCWLYYFSKFIELLD 130
           S+          WGI        G       +++  + T    +   W++  SK IEL D
Sbjct: 78  SILGAVRM----WGIMGTVLLTGGLKQTVCFINFIDNSTVKFWS---WVFLLSKVIELGD 130

Query: 131 TIFFVLRKKNSQVTFLHVFHH-TIMPWT-WWFGVKFAAGGLGTFHALLNTAVHVVMYSYY 188
           T F +LRK+   + F+H +HH T++ +T + +  K  AGG   +   +N  VH +MY+YY
Sbjct: 131 TAFIILRKR--PLIFIHWYHHSTVLVYTSFGYKNKVPAGG---WFVTMNFGVHAIMYTYY 185

Query: 189 GLSALGPAYQKYLWWKKYLTSLQLVQ-FVIVAIHISQFFFMED--CKYQFPVFACIIMSY 245
            L A      K L     +TSLQ++Q FV   + I  + + +D  C           + Y
Sbjct: 186 TLKAANVKPPKML--PMLITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILY 243

Query: 246 SFMFLLLFLHFWYRAYTKGQRLPKT 270
              + +LF HF+ + Y + +   KT
Sbjct: 244 -MTYFILFAHFFCQTYIRPKVKAKT 267


>gi|46409292 dpy-19-like 3 [Homo sapiens]
          Length = 716

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 14/137 (10%)

Query: 122 FSKFIELLDTIFFV----LRKKNSQVTFLHVFHHTIMPWTWWFGVKFAAGGLGTFHALLN 177
           F+ F  L DT+ F     +      V F+  FH+           K   G +        
Sbjct: 406 FNTFGRLSDTLLFYAYIFVLSITVIVAFVVAFHNLSDSTNQQSVGKMEKGTVDLKPETAY 465

Query: 178 TAVHVVMYSYYGLSALGPAYQKYLWWKKY-------LTSLQLVQFVIVAIHISQFFFMED 230
             +H +++ +  LS +G    KYLW           L S ++ + ++ ++H+     +  
Sbjct: 466 NLIHTILFGFLALSTMG---MKYLWTSHMCVFASFGLCSPEIWELLLKSVHLYNPKRICI 522

Query: 231 CKYQFPVFACIIMSYSF 247
            +Y  P+   + + Y F
Sbjct: 523 MRYSVPILILLYLCYKF 539


>gi|49533617 sterol O-acyltransferase 1 [Homo sapiens]
          Length = 550

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 26/150 (17%), Positives = 59/150 (39%), Gaps = 29/150 (19%)

Query: 117 CWLYYFSKFIELLDTIFFV-LRKKNSQVTFLHVFHHTIMPWT---------WWFGVKFAA 166
           CWL  F++ +   D +F+       S   +   ++  +  W          W+F  +F +
Sbjct: 387 CWLNAFAEMLRFGDRMFYKDWWNSTSYSNYYRTWNVVVHDWLYYYAYKDFLWFFSKRFKS 446

Query: 167 GGLGTFHALLNTAVH---------------VVMYSYYGLS---ALGPAYQKYLWWKKYLT 208
             +    A+ +  VH                V++ ++G++    +  + +K +W     T
Sbjct: 447 AAMLAVFAV-SAVVHEYALAVCLSFFYPVLFVLFMFFGMAFNFIVNDSRKKPIWNVLMWT 505

Query: 209 SLQLVQFVIVAIHISQFFFMEDCKYQFPVF 238
           SL L   V++  +  +++  + C  + P F
Sbjct: 506 SLFLGNGVLLCFYSQEWYARQHCPLKNPTF 535


>gi|194018476 TBC1 domain family, member 2B isoform b [Homo sapiens]
          Length = 914

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 53  PKLMENRKPFELKKAMITYNFFIVLFSVYMCYEFVMSGWGIGYSFRCDIVDYSRSPTALR 112
           P+L  + + +++   +IT+N+F+V+F   +  + +   W        D   Y       R
Sbjct: 811 PRLHGHFEQYKVDYTLITFNWFLVVFVDSVVSDILFKIW--------DSFLYEGPKVIFR 862

Query: 113 MARTCWLYYFSKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMPWTW 158
            A   + Y   + ++L D++      +    T L     T  P TW
Sbjct: 863 FALALFKYKEEEILKLQDSMSIFKYLRYFTRTILDARSGTDAPTTW 908


>gi|51094101 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2
           [Homo sapiens]
          Length = 881

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 123 SKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMP 155
           +K  E L T FF++R+       LH+ H+ + P
Sbjct: 305 TKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRP 337


>gi|164419743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1
           [Homo sapiens]
          Length = 882

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 123 SKFIELLDTIFFVLRKKNSQVTFLHVFHHTIMP 155
           +K  E L T FF++R+       LH+ H+ + P
Sbjct: 305 TKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRP 337


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.332    0.142    0.481 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,008,371
Number of Sequences: 37866
Number of extensions: 394611
Number of successful extensions: 976
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 944
Number of HSP's gapped (non-prelim): 15
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.