Guide to the Human Genome
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Name: LOC390594 Sequence: fasta or formatted (458aa) NCBI GI: 157384932
Description:

hypothetical protein LOC390594

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.4         66           4
 C cysteine            3.1         14           1
 D aspartate           5.0         23           2
 E glutamate           5.7         26           3
 F phenylalanine       5.0         23           2
 G glycine             8.7         40           2
 H histidine           2.0          9           1
 I isoleucine          1.3          6           1
 K lysine              0.9          4           1
 L leucine            12.4         57           2
 M methionine          0.9          4           1
 N asparagine          1.5          7           1
 P proline             6.1         28           2
 Q glutamine           3.3         15           1
 R arginine            7.6         35           2
 S serine              4.4         20           2
 T threonine           5.9         27           2
 V valine              7.2         33           2
 W tryptophan          1.7          8           1
 Y tyrosine            2.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC390594 
KLHDC5                0.110   kelch domain containing 5 
KLHDC7B               0.076   kelch domain containing 7B 
KLHDC7A               0.074   kelch domain containing 7A 
KLHL9                 0.073   kelch-like 9 
KBTBD11               0.066   kelch repeat and BTB (POZ) domain containing 11 [Homo...
KLHL13                0.065   kelch-like 13 
KLHL31                0.063   kelch repeat and BTB (POZ) domain containing 1 [Homo...
KLHL5                 0.061   kelch-like 5 isoform 3 
KLHL5                 0.061   kelch-like 5 isoform 2 
KLHL5                 0.061   kelch-like 5 isoform 1 
KLHL12                0.058   kelch-like 12 
KLHL8                 0.057   kelch-like 8 
KLHL3                 0.055   kelch-like 3 
KLHL17                0.055   kelch-like 17 
KLHL14                0.055   kelch-like 14 
KLHL36                0.054   kelch-like 36 
IVNS1ABP              0.052   influenza virus NS1A binding protein 
KLHL4                 0.050   kelch-like 4 isoform 2 
KLHL4                 0.050   kelch-like 4 isoform 1 
KLHL20                0.048   kelch-like 20 
KLHL33                0.045   kelch-like 33 
KLHL1                 0.044   kelch-like 1 protein 
KLHL32                0.044   kelch-like 32 
KLHL22                0.043   kelch-like 
KEAP1                 0.042   kelch-like ECH-associated protein 1 
KEAP1                 0.042   kelch-like ECH-associated protein 1 
GAN                   0.041   gigaxonin 
KLHL35                0.041   kelch-like 35 
KLHL34                0.041   kelch-like 34 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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