Search of human proteins with 156139137

Search of human proteins with 156139137

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|156139137 hypothetical protein LOC80017 isoform c [Homo
sapiens]
         (564 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|156139137 hypothetical protein LOC80017 isoform c [Homo sapiens]  1144   0.0  
gi|156139133 hypothetical protein LOC80017 isoform a [Homo sapiens]  1115   0.0  
gi|156139131 hypothetical protein LOC80017 isoform a [Homo sapiens]  1115   0.0  
gi|156139129 hypothetical protein LOC80017 isoform a [Homo sapiens]  1115   0.0  
gi|156139135 hypothetical protein LOC80017 isoform b [Homo sapiens]  1109   0.0  
gi|7661532 nin one binding protein [Homo sapiens]                      33   0.69 
gi|42516561 ubiquitin specific protease 33 isoform 3 [Homo sapiens]    30   5.9  
gi|42516567 ubiquitin specific protease 33 isoform 1 [Homo sapiens]    30   5.9  
gi|42516565 ubiquitin specific protease 33 isoform 2 [Homo sapiens]    30   5.9  
gi|148792970 TAF4b RNA polymerase II, TATA box binding protein (...    30   7.7  

>gi|156139137 hypothetical protein LOC80017 isoform c [Homo sapiens]
          Length = 564

 Score = 1144 bits (2958), Expect = 0.0
 Identities = 564/564 (100%), Positives = 564/564 (100%)

Query: 1   MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT 60
           MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT
Sbjct: 1   MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT 60

Query: 61  GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF 120
           GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF
Sbjct: 61  GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF 120

Query: 121 FLGCSFSLEEALEKAGLPRRDPAGHSQTTVPCVTHAGFCCPLVVTMRPIPKDKLEGLVRA 180
           FLGCSFSLEEALEKAGLPRRDPAGHSQTTVPCVTHAGFCCPLVVTMRPIPKDKLEGLVRA
Sbjct: 121 FLGCSFSLEEALEKAGLPRRDPAGHSQTTVPCVTHAGFCCPLVVTMRPIPKDKLEGLVRA 180

Query: 181 CCSLGELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAVSSCETPLAFASIPGCTV 240
           CCSLGELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAVSSCETPLAFASIPGCTV
Sbjct: 181 CCSLGELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAVSSCETPLAFASIPGCTV 240

Query: 241 MTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKIRELESMIGIDPGNRGIG 300
           MTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKIRELESMIGIDPGNRGIG
Sbjct: 241 MTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKIRELESMIGIDPGNRGIG 300

Query: 301 HLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPPGAVALVAFLQALEKEVA 360
           HLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPPGAVALVAFLQALEKEVA
Sbjct: 301 HLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPPGAVALVAFLQALEKEVA 360

Query: 361 IIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQAFLCKNGDPQTPRFDHLV 420
           IIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQAFLCKNGDPQTPRFDHLV
Sbjct: 361 IIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQAFLCKNGDPQTPRFDHLV 420

Query: 421 AIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISSTGVSNWGGYALACALYI 480
           AIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISSTGVSNWGGYALACALYI
Sbjct: 421 AIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISSTGVSNWGGYALACALYI 480

Query: 481 LYSCAVHSQYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEV 540
           LYSCAVHSQYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEV
Sbjct: 481 LYSCAVHSQYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEV 540

Query: 541 DGLPFHNTHAEMIQKLVDVTTAQV 564
           DGLPFHNTHAEMIQKLVDVTTAQV
Sbjct: 541 DGLPFHNTHAEMIQKLVDVTTAQV 564


>gi|156139133 hypothetical protein LOC80017 isoform a [Homo sapiens]
          Length = 616

 Score = 1115 bits (2884), Expect = 0.0
 Identities = 564/616 (91%), Positives = 564/616 (91%), Gaps = 52/616 (8%)

Query: 1   MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT 60
           MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT
Sbjct: 1   MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT 60

Query: 61  GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF 120
           GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF
Sbjct: 61  GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF 120

Query: 121 FLGCSFSLEEALEKAGLPRRDPAGHSQTTVPCVTHAGFCCPLVVTMRPIPKDKLEGLVRA 180
           FLGCSFSLEEALEKAGLPRRDPAGHSQTTVPCVTHAGFCCPLVVTMRPIPKDKLEGLVRA
Sbjct: 121 FLGCSFSLEEALEKAGLPRRDPAGHSQTTVPCVTHAGFCCPLVVTMRPIPKDKLEGLVRA 180

Query: 181 CCSLG------------ELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAVSSCET 228
           CCSLG            ELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAVSSCET
Sbjct: 181 CCSLGGEQGQPVHMGDPELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAVSSCET 240

Query: 229 PLAFASIPGCTVMTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKIRELES 288
           PLAFASIPGCTVMTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKIRELES
Sbjct: 241 PLAFASIPGCTVMTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKIRELES 300

Query: 289 MIGIDPGNRGIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPPGAVAL 348
           MIGIDPGNRGIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPPGAVAL
Sbjct: 301 MIGIDPGNRGIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPPGAVAL 360

Query: 349 VAFLQALEKEVAIIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQAFLCKN 408
           VAFLQALEKEVAIIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQAFLCKN
Sbjct: 361 VAFLQALEKEVAIIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQAFLCKN 420

Query: 409 GDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISST---- 464
           GDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISST    
Sbjct: 421 GDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISSTGVGD 480

Query: 465 ------------------------------------GVSNWGGYALACALYILYSCAVHS 488
                                               GVSNWGGYALACALYILYSCAVHS
Sbjct: 481 GGNELGMGKVKEAVRRHIRHGDVIACDVEADFAVIAGVSNWGGYALACALYILYSCAVHS 540

Query: 489 QYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEVDGLPFHNT 548
           QYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEVDGLPFHNT
Sbjct: 541 QYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEVDGLPFHNT 600

Query: 549 HAEMIQKLVDVTTAQV 564
           HAEMIQKLVDVTTAQV
Sbjct: 601 HAEMIQKLVDVTTAQV 616


>gi|156139131 hypothetical protein LOC80017 isoform a [Homo sapiens]
          Length = 616

 Score = 1115 bits (2884), Expect = 0.0
 Identities = 564/616 (91%), Positives = 564/616 (91%), Gaps = 52/616 (8%)

Query: 1   MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT 60
           MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT
Sbjct: 1   MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT 60

Query: 61  GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF 120
           GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF
Sbjct: 61  GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF 120

Query: 121 FLGCSFSLEEALEKAGLPRRDPAGHSQTTVPCVTHAGFCCPLVVTMRPIPKDKLEGLVRA 180
           FLGCSFSLEEALEKAGLPRRDPAGHSQTTVPCVTHAGFCCPLVVTMRPIPKDKLEGLVRA
Sbjct: 121 FLGCSFSLEEALEKAGLPRRDPAGHSQTTVPCVTHAGFCCPLVVTMRPIPKDKLEGLVRA 180

Query: 181 CCSLG------------ELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAVSSCET 228
           CCSLG            ELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAVSSCET
Sbjct: 181 CCSLGGEQGQPVHMGDPELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAVSSCET 240

Query: 229 PLAFASIPGCTVMTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKIRELES 288
           PLAFASIPGCTVMTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKIRELES
Sbjct: 241 PLAFASIPGCTVMTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKIRELES 300

Query: 289 MIGIDPGNRGIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPPGAVAL 348
           MIGIDPGNRGIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPPGAVAL
Sbjct: 301 MIGIDPGNRGIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPPGAVAL 360

Query: 349 VAFLQALEKEVAIIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQAFLCKN 408
           VAFLQALEKEVAIIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQAFLCKN
Sbjct: 361 VAFLQALEKEVAIIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQAFLCKN 420

Query: 409 GDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISST---- 464
           GDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISST    
Sbjct: 421 GDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISSTGVGD 480

Query: 465 ------------------------------------GVSNWGGYALACALYILYSCAVHS 488
                                               GVSNWGGYALACALYILYSCAVHS
Sbjct: 481 GGNELGMGKVKEAVRRHIRHGDVIACDVEADFAVIAGVSNWGGYALACALYILYSCAVHS 540

Query: 489 QYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEVDGLPFHNT 548
           QYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEVDGLPFHNT
Sbjct: 541 QYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEVDGLPFHNT 600

Query: 549 HAEMIQKLVDVTTAQV 564
           HAEMIQKLVDVTTAQV
Sbjct: 601 HAEMIQKLVDVTTAQV 616


>gi|156139129 hypothetical protein LOC80017 isoform a [Homo sapiens]
          Length = 616

 Score = 1115 bits (2884), Expect = 0.0
 Identities = 564/616 (91%), Positives = 564/616 (91%), Gaps = 52/616 (8%)

Query: 1   MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT 60
           MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT
Sbjct: 1   MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT 60

Query: 61  GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF 120
           GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF
Sbjct: 61  GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF 120

Query: 121 FLGCSFSLEEALEKAGLPRRDPAGHSQTTVPCVTHAGFCCPLVVTMRPIPKDKLEGLVRA 180
           FLGCSFSLEEALEKAGLPRRDPAGHSQTTVPCVTHAGFCCPLVVTMRPIPKDKLEGLVRA
Sbjct: 121 FLGCSFSLEEALEKAGLPRRDPAGHSQTTVPCVTHAGFCCPLVVTMRPIPKDKLEGLVRA 180

Query: 181 CCSLG------------ELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAVSSCET 228
           CCSLG            ELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAVSSCET
Sbjct: 181 CCSLGGEQGQPVHMGDPELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAVSSCET 240

Query: 229 PLAFASIPGCTVMTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKIRELES 288
           PLAFASIPGCTVMTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKIRELES
Sbjct: 241 PLAFASIPGCTVMTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKIRELES 300

Query: 289 MIGIDPGNRGIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPPGAVAL 348
           MIGIDPGNRGIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPPGAVAL
Sbjct: 301 MIGIDPGNRGIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPPGAVAL 360

Query: 349 VAFLQALEKEVAIIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQAFLCKN 408
           VAFLQALEKEVAIIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQAFLCKN
Sbjct: 361 VAFLQALEKEVAIIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQAFLCKN 420

Query: 409 GDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISST---- 464
           GDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISST    
Sbjct: 421 GDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISSTGVGD 480

Query: 465 ------------------------------------GVSNWGGYALACALYILYSCAVHS 488
                                               GVSNWGGYALACALYILYSCAVHS
Sbjct: 481 GGNELGMGKVKEAVRRHIRHGDVIACDVEADFAVIAGVSNWGGYALACALYILYSCAVHS 540

Query: 489 QYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEVDGLPFHNT 548
           QYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEVDGLPFHNT
Sbjct: 541 QYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEVDGLPFHNT 600

Query: 549 HAEMIQKLVDVTTAQV 564
           HAEMIQKLVDVTTAQV
Sbjct: 601 HAEMIQKLVDVTTAQV 616


>gi|156139135 hypothetical protein LOC80017 isoform b [Homo sapiens]
          Length = 621

 Score = 1109 bits (2868), Expect = 0.0
 Identities = 564/621 (90%), Positives = 564/621 (90%), Gaps = 57/621 (9%)

Query: 1   MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT 60
           MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT
Sbjct: 1   MPFTLHLRSRLPSAIRSLILQKKPNIRNTSSMAGELRPASLVVLPRSLAPAFERFCQVNT 60

Query: 61  GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF 120
           GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF
Sbjct: 61  GPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQYSEQLKDMVAF 120

Query: 121 FLGCSFSLEEALEKAGLPRRDPAGHSQ-----TTVPCVTHAGFCCPLVVTMRPIPKDKLE 175
           FLGCSFSLEEALEKAGLPRRDPAGHSQ     TTVPCVTHAGFCCPLVVTMRPIPKDKLE
Sbjct: 121 FLGCSFSLEEALEKAGLPRRDPAGHSQAGAYKTTVPCVTHAGFCCPLVVTMRPIPKDKLE 180

Query: 176 GLVRACCSLG------------ELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAV 223
           GLVRACCSLG            ELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAV
Sbjct: 181 GLVRACCSLGGEQGQPVHMGDPELLGIKELSKPAYGDAMVCPPGEVPVFWPSPLTSLGAV 240

Query: 224 SSCETPLAFASIPGCTVMTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKI 283
           SSCETPLAFASIPGCTVMTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKI
Sbjct: 241 SSCETPLAFASIPGCTVMTDLKDAKAPPGCLTPERIPEVHHISQDPLHYSIASVSASQKI 300

Query: 284 RELESMIGIDPGNRGIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPP 343
           RELESMIGIDPGNRGIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPP
Sbjct: 301 RELESMIGIDPGNRGIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETDGPP 360

Query: 344 GAVALVAFLQALEKEVAIIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQA 403
           GAVALVAFLQALEKEVAIIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQA
Sbjct: 361 GAVALVAFLQALEKEVAIIVDQRAWNLHQKIVEDAVEQGVLKTQIPILTYQGGSVEAAQA 420

Query: 404 FLCKNGDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISS 463
           FLCKNGDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISS
Sbjct: 421 FLCKNGDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGISS 480

Query: 464 T----------------------------------------GVSNWGGYALACALYILYS 483
           T                                        GVSNWGGYALACALYILYS
Sbjct: 481 TGVGDGGNELGMGKVKEAVRRHIRHGDVIACDVEADFAVIAGVSNWGGYALACALYILYS 540

Query: 484 CAVHSQYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEVDGL 543
           CAVHSQYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEVDGL
Sbjct: 541 CAVHSQYLRKAVGPSRAPGDQAWTQALPSVIKEEKMLGILVQHKVRSGVSGIVGMEVDGL 600

Query: 544 PFHNTHAEMIQKLVDVTTAQV 564
           PFHNTHAEMIQKLVDVTTAQV
Sbjct: 601 PFHNTHAEMIQKLVDVTTAQV 621


>gi|7661532 nin one binding protein [Homo sapiens]
          Length = 412

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 298 GIGHLLCKDELLKASLSLSHARSVLITTGFPTHFNHEPPEETD 340
           G+ HL  + + +K S S+ H  + L  +GF   +  +PP+ET+
Sbjct: 99  GVSHLKQEPQKVKVSSSIQHPETPLHISGFHLPYKPKPPQETE 141


>gi|42516561 ubiquitin specific protease 33 isoform 3 [Homo sapiens]
          Length = 828

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 402 QAFLCKNGDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGI 461
           Q FL K+   Q   +D L  I   G A+ G+Y    + N+ +L    DD     + +  +
Sbjct: 635 QPFLAKDSPAQIVTYDLLSVICHHGTASSGHYIAYCRNNLNNLWYEFDD-----QSVTEV 689

Query: 462 SSTGVSNWGGYAL 474
           S + V N   Y L
Sbjct: 690 SESTVQNAEAYVL 702


>gi|42516567 ubiquitin specific protease 33 isoform 1 [Homo sapiens]
          Length = 942

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 402 QAFLCKNGDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGI 461
           Q FL K+   Q   +D L  I   G A+ G+Y    + N+ +L    DD     + +  +
Sbjct: 643 QPFLAKDSPAQIVTYDLLSVICHHGTASSGHYIAYCRNNLNNLWYEFDD-----QSVTEV 697

Query: 462 SSTGVSNWGGYAL 474
           S + V N   Y L
Sbjct: 698 SESTVQNAEAYVL 710


>gi|42516565 ubiquitin specific protease 33 isoform 2 [Homo sapiens]
          Length = 911

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 402 QAFLCKNGDPQTPRFDHLVAIERAGRAADGNYYNARKMNIKHLVDPIDDLFLAAKKIPGI 461
           Q FL K+   Q   +D L  I   G A+ G+Y    + N+ +L    DD     + +  +
Sbjct: 612 QPFLAKDSPAQIVTYDLLSVICHHGTASSGHYIAYCRNNLNNLWYEFDD-----QSVTEV 666

Query: 462 SSTGVSNWGGYAL 474
           S + V N   Y L
Sbjct: 667 SESTVQNAEAYVL 679


>gi|148792970 TAF4b RNA polymerase II, TATA box binding protein
           (TBP)-associated factor, 105kDa [Homo sapiens]
          Length = 862

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 197 AYGDAMVCPPGEVPVFWPSPLTSLGA-----VSSCETPLAFASI--PGCTVMTDLKDAKA 249
           A G   + P G +PV   S   +LGA     VS C  P A   +  P  T++T +    A
Sbjct: 19  ASGTVTMAPAGALPVRVESTPVALGAVTKAPVSVCVEPTASQPLRSPVGTLVTKVAPVSA 78

Query: 250 PPGCLTPERIP 260
           PP   +  R+P
Sbjct: 79  PPKVSSGPRLP 89


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,361,738
Number of Sequences: 37866
Number of extensions: 1203075
Number of successful extensions: 2424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2406
Number of HSP's gapped (non-prelim): 17
length of query: 564
length of database: 18,247,518
effective HSP length: 108
effective length of query: 456
effective length of database: 14,157,990
effective search space: 6456043440
effective search space used: 6456043440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.