Search of human proteins with 154426270

Search of human proteins with 154426270

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|154426270 early undifferentiated retina and lens isoform 3
[Homo sapiens]
         (221 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|154426270 early undifferentiated retina and lens isoform 3 [H...   465   e-131
gi|154426331 early undifferentiated retina and lens isoform 1 [H...   465   e-131
gi|154426302 early undifferentiated retina and lens isoform 2 [H...   465   e-131
gi|115430110 hypothetical protein LOC153643 [Homo sapiens]             29   2.8  
gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo s...    29   3.6  
gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo sa...    29   3.6  
gi|5453908 phosphatidylinositol transfer protein, alpha [Homo sa...    28   4.7  

>gi|154426270 early undifferentiated retina and lens isoform 3 [Homo
           sapiens]
          Length = 221

 Score =  465 bits (1197), Expect = e-131
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD 60
           MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD
Sbjct: 1   MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD 60

Query: 61  CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL 120
           CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL
Sbjct: 61  CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL 120

Query: 121 FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA 180
           FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA
Sbjct: 121 FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA 180

Query: 181 TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREE 221
           TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREE
Sbjct: 181 TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREE 221


>gi|154426331 early undifferentiated retina and lens isoform 1 [Homo
           sapiens]
          Length = 297

 Score =  465 bits (1197), Expect = e-131
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD 60
           MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD
Sbjct: 1   MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD 60

Query: 61  CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL 120
           CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL
Sbjct: 61  CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL 120

Query: 121 FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA 180
           FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA
Sbjct: 121 FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA 180

Query: 181 TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREE 221
           TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREE
Sbjct: 181 TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREE 221


>gi|154426302 early undifferentiated retina and lens isoform 2 [Homo
           sapiens]
          Length = 296

 Score =  465 bits (1197), Expect = e-131
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD 60
           MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD
Sbjct: 1   MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD 60

Query: 61  CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL 120
           CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL
Sbjct: 61  CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL 120

Query: 121 FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA 180
           FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA
Sbjct: 121 FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA 180

Query: 181 TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREE 221
           TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREE
Sbjct: 181 TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREE 221


>gi|115430110 hypothetical protein LOC153643 [Homo sapiens]
          Length = 452

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 78  LSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHLFNFRHKPEEKLLPQFDS 137
           LS + YEEV+       N  ++Y ++  L   +EC K  Q  L    +K EEKLL Q  S
Sbjct: 302 LSSNLYEEVENNKKWTENQFLKYRKDH-LGHINECLKVLQEKLEKSENKMEEKLL-QLSS 359

Query: 138 QVPKY 142
           +V  +
Sbjct: 360 KVENF 364


>gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo
           sapiens]
          Length = 1235

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 20/70 (28%), Positives = 26/70 (37%)

Query: 147 IDGSAGGISNCTQRILEQRENTDFGLSMLQDSGATLCRNSVLWPHSHNQAQKKEETISSP 206
           + G   G +   Q IL Q  NT F  S   D GA+L     L    H    + + T    
Sbjct: 479 VAGHPAGSTYSEQDILRQELNTRFLASQSADRGASLGPPPYLRTEFHQHQHQHQHTHQHT 538

Query: 207 EANVQTQHPH 216
             +  T  PH
Sbjct: 539 HQHTFTPFPH 548


>gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo
           sapiens]
          Length = 1259

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 20/70 (28%), Positives = 26/70 (37%)

Query: 147 IDGSAGGISNCTQRILEQRENTDFGLSMLQDSGATLCRNSVLWPHSHNQAQKKEETISSP 206
           + G   G +   Q IL Q  NT F  S   D GA+L     L    H    + + T    
Sbjct: 479 VAGHPAGSTYSEQDILRQELNTRFLASQSADRGASLGPPPYLRTEFHQHQHQHQHTHQHT 538

Query: 207 EANVQTQHPH 216
             +  T  PH
Sbjct: 539 HQHTFTPFPH 548


>gi|5453908 phosphatidylinositol transfer protein, alpha [Homo
           sapiens]
          Length = 270

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 117 QHHLFNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNC---TQRILEQRENTD 169
           Q+ + NF HK E +L   F  Q+  +  KW+D +   I      T+R L++    D
Sbjct: 206 QNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKD 261


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.130    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,194,244
Number of Sequences: 37866
Number of extensions: 403053
Number of successful extensions: 804
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 7
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.