Search of human proteins with 153252157

Search of human proteins with 153252157

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|153252157 secretoglobin, family 1C, member 1 [Homo sapiens]
         (95 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|153252157 secretoglobin, family 1C, member 1 [Homo sapiens]        191   1e-49
gi|147901293 secretoglobin, family 1C, member 1-like [Homo sapiens]   188   9e-49
gi|4507809 secretoglobin, family 1A, member 1 (uteroglobin) [Hom...    39   9e-04
gi|5729907 lipophilin A precursor [Homo sapiens]                       30   0.42 
gi|78190478 Kv channel interacting protein 1 isoform 3 [Homo sap...    28   2.1  
gi|78190480 Kv channel interacting protein 1 isoform 1 [Homo sap...    28   2.1  
gi|7657247 Kv channel interacting protein 1 isoform 2 [Homo sapi...    28   2.1  
gi|110825988 TAR RNA binding protein 1 [Homo sapiens]                  27   3.5  
gi|31657114 armadillo repeat containing 4 [Homo sapiens]               27   3.5  
gi|227498224 beta-1,4-N-acetyl-galactosaminyl transferase 2 isof...    26   6.0  
gi|227497758 beta-1,4-N-acetyl-galactosaminyl transferase 2 isof...    26   6.0  
gi|227497754 beta-1,4-N-acetyl-galactosaminyl transferase 2 isof...    26   6.0  

>gi|153252157 secretoglobin, family 1C, member 1 [Homo sapiens]
          Length = 95

 Score =  191 bits (484), Expect = 1e-49
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK 60
          MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK
Sbjct: 1  MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK 60

Query: 61 AAMTELKSCIDGLQPMHKAELVKLLVQVLGSQDGA 95
          AAMTELKSCIDGLQPMHKAELVKLLVQVLGSQDGA
Sbjct: 61 AAMTELKSCIDGLQPMHKAELVKLLVQVLGSQDGA 95


>gi|147901293 secretoglobin, family 1C, member 1-like [Homo
          sapiens]
          Length = 95

 Score =  188 bits (477), Expect = 9e-49
 Identities = 94/95 (98%), Positives = 94/95 (98%)

Query: 1  MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK 60
          MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK
Sbjct: 1  MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK 60

Query: 61 AAMTELKSCIDGLQPMHKAELVKLLVQVLGSQDGA 95
          AAMTELKSC DGLQPMHKAELVKLLVQVLGSQDGA
Sbjct: 61 AAMTELKSCRDGLQPMHKAELVKLLVQVLGSQDGA 95


>gi|4507809 secretoglobin, family 1A, member 1 (uteroglobin) [Homo
          sapiens]
          Length = 91

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 6  ALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAMTE 65
          A+ L  +TL   C  A+ E    F    ++TLL+ TP   YE  +  ++ ++D + A  +
Sbjct: 4  AVTLTLVTLALCCSSASAEICPSF-QRVIETLLMDTPSS-YEAAMELFSPDQDMREAGAQ 61

Query: 66 LKSCIDGLQPMHKAELVKLLVQVLGS 91
          LK  +D L    +  ++KL+ ++  S
Sbjct: 62 LKKLVDTLPQKPRESIIKLMEKIAQS 87


>gi|5729907 lipophilin A precursor [Homo sapiens]
          Length = 90

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 16/94 (17%)

Query: 1  MKGSRALLLVALTLFC------ICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYN 54
          M+ S  LLL+ L L C      +C+ A G +   F       LL G P  +++  L K+ 
Sbjct: 1  MRLSVCLLLLTLALCCYRANAVVCQ-ALGSEITGF-------LLAGKP--VFKFQLAKFK 50

Query: 55 VNEDAKAAMTELKSCIDGLQPMHKAELVKLLVQV 88
             +A AA  E+K C+D +    +  + K L ++
Sbjct: 51 APLEAVAAKMEVKKCVDTMAYEKRVLITKTLGKI 84


>gi|78190478 Kv channel interacting protein 1 isoform 3 [Homo
           sapiens]
          Length = 225

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 22  TGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAMTELKSCIDGLQPM 76
           TG    E F+  L  LL GT  E    T   Y++N+D      E+   +  +  M
Sbjct: 112 TGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDM 166


>gi|78190480 Kv channel interacting protein 1 isoform 1 [Homo
           sapiens]
          Length = 227

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 22  TGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAMTELKSCIDGLQPM 76
           TG    E F+  L  LL GT  E    T   Y++N+D      E+   +  +  M
Sbjct: 114 TGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDM 168


>gi|7657247 Kv channel interacting protein 1 isoform 2 [Homo
           sapiens]
          Length = 216

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 22  TGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAMTELKSCIDGLQPM 76
           TG    E F+  L  LL GT  E    T   Y++N+D      E+   +  +  M
Sbjct: 103 TGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDM 157


>gi|110825988 TAR RNA binding protein 1 [Homo sapiens]
          Length = 1621

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 1   MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK 60
           +K  R L L+ L L   CR+      D+     LQ   + T E + E  L +  +NE   
Sbjct: 686 LKTDRCLQLL-LKLLNTCRLKGSSAQDDEVSTVLQNFFMSTTESISEFILRRLTMNE--L 742

Query: 61  AAMTELKSCIDGLQPMHKAELVKLLVQV 88
            ++++L  C   L  M   EL+ L ++V
Sbjct: 743 NSVSDLDRC--HLYLMVLTELINLHLKV 768


>gi|31657114 armadillo repeat containing 4 [Homo sapiens]
          Length = 1044

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 54   NVNEDAKAAMTELKSCIDGLQPMHKAELVKLLVQVLGSQD 93
            NV+     A+ +L    D    MH+   VKLL+ ++GS D
Sbjct: 978  NVHRATAQALYQLSEDADNCITMHENGAVKLLLDMVGSPD 1017


>gi|227498224 beta-1,4-N-acetyl-galactosaminyl transferase 2 isoform
           b [Homo sapiens]
          Length = 506

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 26  NDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAM 63
           + EFF+D L TLLVG+  E+  G   +  V +   AA+
Sbjct: 437 HSEFFIDGLGTLLVGSCPEVIIGHQSRSPVVDSELAAL 474


>gi|227497758 beta-1,4-N-acetyl-galactosaminyl transferase 2 isoform
           c [Homo sapiens]
          Length = 480

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 26  NDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAM 63
           + EFF+D L TLLVG+  E+  G   +  V +   AA+
Sbjct: 411 HSEFFIDGLGTLLVGSCPEVIIGHQSRSPVVDSELAAL 448


>gi|227497754 beta-1,4-N-acetyl-galactosaminyl transferase 2 isoform
           a [Homo sapiens]
          Length = 566

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 26  NDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAM 63
           + EFF+D L TLLVG+  E+  G   +  V +   AA+
Sbjct: 497 HSEFFIDGLGTLLVGSCPEVIIGHQSRSPVVDSELAAL 534


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,273,705
Number of Sequences: 37866
Number of extensions: 115436
Number of successful extensions: 320
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 12
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.