Search of human proteins with 153252154

Search of human proteins with 153252154

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|153252154 RWD domain containing 3 isoform a [Homo sapiens]
         (267 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|153252154 RWD domain containing 3 isoform a [Homo sapiens]         530   e-151
gi|189458889 RWD domain containing 3 isoform b [Homo sapiens]         386   e-107
gi|8393018 RWD domain containing 2B [Homo sapiens]                     44   1e-04
gi|34222104 hypothetical protein LOC26074 [Homo sapiens]               32   0.44 
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]         30   2.2  
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]         30   2.2  
gi|207029299 NIMA-related kinase 10 isoform 3 [Homo sapiens]           30   2.9  
gi|5031927 skeletal muscle receptor tyrosine kinase [Homo sapiens]     30   2.9  
gi|34878787 ring finger protein 25 [Homo sapiens]                      29   3.8  
gi|65287717 eukaryotic translation initiation factor 2 alpha kin...    28   6.4  
gi|239750922 PREDICTED: hypothetical protein [Homo sapiens]            28   8.4  
gi|239745320 PREDICTED: hypothetical protein XP_002343437 [Homo ...    28   8.4  
gi|34878904 synaptonemal complex protein 1 [Homo sapiens]              28   8.4  

>gi|153252154 RWD domain containing 3 isoform a [Homo sapiens]
          Length = 267

 Score =  530 bits (1364), Expect = e-151
 Identities = 267/267 (100%), Positives = 267/267 (100%)

Query: 1   MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVN 60
           MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVN
Sbjct: 1   MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVN 60

Query: 61  YPSCLPGISINSEQLTRAQCVTVKENLLEQAESLLSEPMVHELVLWIQQNLRHILSQPET 120
           YPSCLPGISINSEQLTRAQCVTVKENLLEQAESLLSEPMVHELVLWIQQNLRHILSQPET
Sbjct: 61  YPSCLPGISINSEQLTRAQCVTVKENLLEQAESLLSEPMVHELVLWIQQNLRHILSQPET 120

Query: 121 GSGSEKCTFSTSTTMDDGLWITLLHLDHMRAKTKYVKIVEKWASDLRLTGRLMFMGKIIL 180
           GSGSEKCTFSTSTTMDDGLWITLLHLDHMRAKTKYVKIVEKWASDLRLTGRLMFMGKIIL
Sbjct: 121 GSGSEKCTFSTSTTMDDGLWITLLHLDHMRAKTKYVKIVEKWASDLRLTGRLMFMGKIIL 180

Query: 181 ILLQGDRNNLKEYLILQKTSKVDVDSSGKKCKEKMISVLFETKVQTEHKRFLAFEVKEYS 240
           ILLQGDRNNLKEYLILQKTSKVDVDSSGKKCKEKMISVLFETKVQTEHKRFLAFEVKEYS
Sbjct: 181 ILLQGDRNNLKEYLILQKTSKVDVDSSGKKCKEKMISVLFETKVQTEHKRFLAFEVKEYS 240

Query: 241 ALDELQKEFETAGLKKLFSEFVLALVK 267
           ALDELQKEFETAGLKKLFSEFVLALVK
Sbjct: 241 ALDELQKEFETAGLKKLFSEFVLALVK 267


>gi|189458889 RWD domain containing 3 isoform b [Homo sapiens]
          Length = 195

 Score =  386 bits (991), Expect = e-107
 Identities = 191/191 (100%), Positives = 191/191 (100%)

Query: 1   MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVN 60
           MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVN
Sbjct: 1   MAEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVN 60

Query: 61  YPSCLPGISINSEQLTRAQCVTVKENLLEQAESLLSEPMVHELVLWIQQNLRHILSQPET 120
           YPSCLPGISINSEQLTRAQCVTVKENLLEQAESLLSEPMVHELVLWIQQNLRHILSQPET
Sbjct: 61  YPSCLPGISINSEQLTRAQCVTVKENLLEQAESLLSEPMVHELVLWIQQNLRHILSQPET 120

Query: 121 GSGSEKCTFSTSTTMDDGLWITLLHLDHMRAKTKYVKIVEKWASDLRLTGRLMFMGKIIL 180
           GSGSEKCTFSTSTTMDDGLWITLLHLDHMRAKTKYVKIVEKWASDLRLTGRLMFMGKIIL
Sbjct: 121 GSGSEKCTFSTSTTMDDGLWITLLHLDHMRAKTKYVKIVEKWASDLRLTGRLMFMGKIIL 180

Query: 181 ILLQGDRNNLK 191
           ILLQGDRNNLK
Sbjct: 181 ILLQGDRNNLK 191


>gi|8393018 RWD domain containing 2B [Homo sapiens]
          Length = 319

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 39/180 (21%), Positives = 82/180 (45%), Gaps = 17/180 (9%)

Query: 57  LPVNYPSCLPGISINSEQLTRAQCVTVKENLLEQAES-LLSEPMVHELVLWIQQNLRHIL 115
           LP  YP+ LP I++ S  L+R+Q   +  +L    +     +  +     W++++    +
Sbjct: 107 LPFKYPAVLPEITVRSVLLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGYV 166

Query: 116 SQPETGSGSEKCTFSTSTTMDDGLWITLLHLDHMRAKTKYVKIVEKWASDLRLTGRLMFM 175
           S+  + S +   T  +   +   LWI   +  H+  K K   I+E WA +L L+G  M  
Sbjct: 167 SRDTSSSPTTGSTVQSVDLIFTRLWI---YSHHIYNKCKRKNILE-WAKELSLSGFSM-P 221

Query: 176 GKIILILLQGDRNNLKEY-----------LILQKTSKVDVDSSGKKCKEKMISVLFETKV 224
           GK  ++ ++G ++  +E+           ++++    +  D +  + + +    +FE KV
Sbjct: 222 GKPGVVCVEGPQSACEEFWSRLRKLNWKRILIRHREDIPFDGTNDETERQRKFSIFEEKV 281


>gi|34222104 hypothetical protein LOC26074 [Homo sapiens]
          Length = 1237

 Score = 32.3 bits (72), Expect = 0.44
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 23   EVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGISINSEQLTRAQCVT 82
            E+++ S  +GT FRIH      ++    L        NY           EQL    C  
Sbjct: 1075 ELVTGSAKNGTYFRIHINKYKMVETITCLSREPFPASNYIRLFG----QHEQLLNNLCAR 1130

Query: 83   VKENLLEQAESLLSEP----MVHELVLWIQQNLRHILSQPE 119
              ENL+    S  +EP    + H+  + +++ LR IL+  E
Sbjct: 1131 YDENLITDLYSYFTEPWCLALFHDRFIDLRKELRQILASKE 1171


>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
          Length = 3907

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 44/195 (22%), Positives = 88/195 (45%), Gaps = 11/195 (5%)

Query: 77   RAQCVTVKENLLEQ--AESLLSEPMVHELVLWIQQNLRHILSQPE--TGSGSEKCTFSTS 132
            + QCV  K  +L Q  +E L  E    E  +W+Q+N+  I+ Q +  TG   E+ +  + 
Sbjct: 3518 KLQCVASKLQVLPQKASERLQFETADDEDFIWVQENIDEIILQLQKLTGQQGEEPSLVSP 3577

Query: 133  TTMDDGLWITLLHLDHMRAKTKYVKIVEKWASDLRLTGRLMFMGKIILILLQ--GDRNNL 190
            +T    L   LL  +     T ++  + +  +DLR    +M + + I    Q    R+N 
Sbjct: 3578 STSCGSLTERLLRQN--AELTGHISQLTEEKNDLR--NMVMKLEEQIRWYRQTGAGRDNS 3633

Query: 191  KEYLILQKTSKVDVDSSGKKCKEKMISVLFETKVQTEHKRF-LAFEVKEYSALDELQKEF 249
              + +    +   + +S K+   +    L ++  + E + + L  E++  S L  L  + 
Sbjct: 3634 SRFSLNGGANIEAIIASEKEVWNREKLTLQKSLKRAEAEVYKLKAELRNDSLLQTLSPDS 3693

Query: 250  ETAGLKKLFSEFVLA 264
            E   LK+++ +++ A
Sbjct: 3694 EHVTLKRIYGKYLRA 3708


>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
          Length = 3899

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 44/195 (22%), Positives = 88/195 (45%), Gaps = 11/195 (5%)

Query: 77   RAQCVTVKENLLEQ--AESLLSEPMVHELVLWIQQNLRHILSQPE--TGSGSEKCTFSTS 132
            + QCV  K  +L Q  +E L  E    E  +W+Q+N+  I+ Q +  TG   E+ +  + 
Sbjct: 3510 KLQCVASKLQVLPQKASERLQFETADDEDFIWVQENIDEIILQLQKLTGQQGEEPSLVSP 3569

Query: 133  TTMDDGLWITLLHLDHMRAKTKYVKIVEKWASDLRLTGRLMFMGKIILILLQ--GDRNNL 190
            +T    L   LL  +     T ++  + +  +DLR    +M + + I    Q    R+N 
Sbjct: 3570 STSCGSLTERLLRQN--AELTGHISQLTEEKNDLR--NMVMKLEEQIRWYRQTGAGRDNS 3625

Query: 191  KEYLILQKTSKVDVDSSGKKCKEKMISVLFETKVQTEHKRF-LAFEVKEYSALDELQKEF 249
              + +    +   + +S K+   +    L ++  + E + + L  E++  S L  L  + 
Sbjct: 3626 SRFSLNGGANIEAIIASEKEVWNREKLTLQKSLKRAEAEVYKLKAELRNDSLLQTLSPDS 3685

Query: 250  ETAGLKKLFSEFVLA 264
            E   LK+++ +++ A
Sbjct: 3686 EHVTLKRIYGKYLRA 3700


>gi|207029299 NIMA-related kinase 10 isoform 3 [Homo sapiens]
          Length = 712

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 141 ITLLHLDHMRAKTKYVKIVEKWASDLRLTGRLMFMGKI--ILILLQGDRNNLKEY 193
           ++LLH DH++     V I+ +   D   +  +   G I  +L +LQGDRN + ++
Sbjct: 297 LSLLHSDHLKLLWSIVWILVQVCEDPETSVEIRIWGGIKQLLHILQGDRNFVSDH 351


>gi|5031927 skeletal muscle receptor tyrosine kinase [Homo sapiens]
          Length = 869

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 11/94 (11%)

Query: 61  YPSCLPGISINSEQLTRAQCVTVKENLLEQAESLLSEPMVHELVLWIQQNLRHILSQPET 120
           +  C PG+      + R  C+ VKE L    E L+ E   H     + ++  H+LS PE 
Sbjct: 379 FQECSPGVVPTPIPICREYCLAVKE-LFCAKEWLVMEEKTHR---GLYRSEMHLLSVPE- 433

Query: 121 GSGSEKCTFSTSTTMDDGLWITLLHLDHMRAKTK 154
                 C+   S   D      L HLD+ +   K
Sbjct: 434 ------CSKLPSMHWDPTACARLPHLDYNKENLK 461


>gi|34878787 ring finger protein 25 [Homo sapiens]
          Length = 459

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 53  LVFHLPVNYPSCLPGISI-NSEQLTRAQCVTVKENLLEQAESLLSEPMVHELV 104
           LV  +P  YP  +P ISI N   L+  Q  T+ + L   A++ L   M++EL+
Sbjct: 66  LVLQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELI 118


>gi|65287717 eukaryotic translation initiation factor 2 alpha kinase
           4 [Homo sapiens]
          Length = 1649

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 49  IPLELVFHLPVNYPSCLPGISI-NSEQLTRAQCVTVKENLLEQAESLLSEPMVHELVLWI 107
           + ++L    P  YP  +P I + N++ L+      +K  L E A+    E M+ EL   +
Sbjct: 71  VKVDLRVKCPPTYPDVVPEIELKNAKGLSNESVNLLKSRLEELAKKHCGEVMIFELAYHV 130

Query: 108 QQNL 111
           Q  L
Sbjct: 131 QSFL 134


>gi|239750922 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 923

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 61  YPSCLPGISINSEQLTRAQCVTVKENLLEQAESLLSEPMVHELVLWIQQNLRHI 114
           + + L GI  N +Q+  +Q      +L   A+     P  H L+ W+QQ L+H+
Sbjct: 734 FDTFLEGIKHNLQQVAGSQ----GHSLAFHAQDGDYSPSSHALLFWVQQYLKHL 783


>gi|239745320 PREDICTED: hypothetical protein XP_002343437 [Homo
           sapiens]
          Length = 923

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 61  YPSCLPGISINSEQLTRAQCVTVKENLLEQAESLLSEPMVHELVLWIQQNLRHI 114
           + + L GI  N +Q+  +Q      +L   A+     P  H L+ W+QQ L+H+
Sbjct: 734 FDTFLEGIKHNLQQVAGSQ----GHSLAFHAQDGDYSPSSHALLFWVQQYLKHL 783


>gi|34878904 synaptonemal complex protein 1 [Homo sapiens]
          Length = 976

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 213 EKMISVLFETKVQTEHKRF-LAFEVKE-YSALDELQKEFE 250
           EKMI+   E +VQ E+ R  + F++KE Y  +  L++E++
Sbjct: 219 EKMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYK 258


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,374,657
Number of Sequences: 37866
Number of extensions: 375068
Number of successful extensions: 980
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 975
Number of HSP's gapped (non-prelim): 16
length of query: 267
length of database: 18,247,518
effective HSP length: 100
effective length of query: 167
effective length of database: 14,460,918
effective search space: 2414973306
effective search space used: 2414973306
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.