Search of human proteins with 14861834

Search of human proteins with 14861834

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14861834 cat eye syndrome chromosome region, candidate 5
isoform 2 precursor [Homo sapiens]
         (423 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14861834 cat eye syndrome chromosome region, candidate 5 isof...   860   0.0  
gi|21914862 cat eye syndrome chromosome region, candidate 5 isof...   775   0.0  
gi|108796653 phosphoglycolate phosphatase [Homo sapiens]               30   3.2  
gi|150170725 zinc and ring finger 4 [Homo sapiens]                     30   4.1  
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ...    30   5.4  
gi|46397310 polyamine oxidase isoform 4 [Homo sapiens]                 29   9.2  
gi|46397308 polyamine oxidase isoform 2 [Homo sapiens]                 29   9.2  
gi|23097272 polyamine oxidase isoform 1 [Homo sapiens]                 29   9.2  
gi|10092677 pyridoxal phosphatase [Homo sapiens]                       29   9.2  
gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo...    29   9.2  
gi|40807463 zinc finger protein 339 [Homo sapiens]                     29   9.2  
gi|155969701 espin-like [Homo sapiens]                                 29   9.2  

>gi|14861834 cat eye syndrome chromosome region, candidate 5 isoform
           2 precursor [Homo sapiens]
          Length = 423

 Score =  860 bits (2223), Expect = 0.0
 Identities = 423/423 (100%), Positives = 423/423 (100%)

Query: 1   MAAWGCVAALGAARGLCWRAARAAAGLQGRPARRCYAVGPAQSPPTFGFLLDIDGVLVRG 60
           MAAWGCVAALGAARGLCWRAARAAAGLQGRPARRCYAVGPAQSPPTFGFLLDIDGVLVRG
Sbjct: 1   MAAWGCVAALGAARGLCWRAARAAAGLQGRPARRCYAVGPAQSPPTFGFLLDIDGVLVRG 60

Query: 61  HRVIPAALKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKAQELSALLGCEVDADQVILSH 120
           HRVIPAALKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKAQELSALLGCEVDADQVILSH
Sbjct: 61  HRVIPAALKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKAQELSALLGCEVDADQVILSH 120

Query: 121 SPMKLFSEYHEKRMLVSGQGPVMENAQGLGFRNVVTVDELRMAFPLLDMVDLERRLKTTP 180
           SPMKLFSEYHEKRMLVSGQGPVMENAQGLGFRNVVTVDELRMAFPLLDMVDLERRLKTTP
Sbjct: 121 SPMKLFSEYHEKRMLVSGQGPVMENAQGLGFRNVVTVDELRMAFPLLDMVDLERRLKTTP 180

Query: 181 LPRNDFPRIEGVLLLGEPVRWETSLQLIMDVLLSNGSPGAGLATPPYPHLPVLASNMDLL 240
           LPRNDFPRIEGVLLLGEPVRWETSLQLIMDVLLSNGSPGAGLATPPYPHLPVLASNMDLL
Sbjct: 181 LPRNDFPRIEGVLLLGEPVRWETSLQLIMDVLLSNGSPGAGLATPPYPHLPVLASNMDLL 240

Query: 241 WMAEAKMPRFGHGTFLLCLETIYQKVTGKELRYEGLMGKPSILTYQYAEDLIRRQAERRG 300
           WMAEAKMPRFGHGTFLLCLETIYQKVTGKELRYEGLMGKPSILTYQYAEDLIRRQAERRG
Sbjct: 241 WMAEAKMPRFGHGTFLLCLETIYQKVTGKELRYEGLMGKPSILTYQYAEDLIRRQAERRG 300

Query: 301 WAAPIRKLYAVGDNPMSDVYGANLFHQYLQKATHDGAPELGAGGTRQQQPSASQSCISIL 360
           WAAPIRKLYAVGDNPMSDVYGANLFHQYLQKATHDGAPELGAGGTRQQQPSASQSCISIL
Sbjct: 301 WAAPIRKLYAVGDNPMSDVYGANLFHQYLQKATHDGAPELGAGGTRQQQPSASQSCISIL 360

Query: 361 VCTGVYNPRNPQSTEPVLGGGEPPFHGHRDLCFSPGLMEASHVVNDVNEAVQLVFRKEGW 420
           VCTGVYNPRNPQSTEPVLGGGEPPFHGHRDLCFSPGLMEASHVVNDVNEAVQLVFRKEGW
Sbjct: 361 VCTGVYNPRNPQSTEPVLGGGEPPFHGHRDLCFSPGLMEASHVVNDVNEAVQLVFRKEGW 420

Query: 421 ALE 423
           ALE
Sbjct: 421 ALE 423


>gi|21914862 cat eye syndrome chromosome region, candidate 5 isoform
           1 [Homo sapiens]
          Length = 393

 Score =  775 bits (2002), Expect = 0.0
 Identities = 382/383 (99%), Positives = 383/383 (100%)

Query: 41  AQSPPTFGFLLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKA 100
           +QSPPTFGFLLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKA
Sbjct: 11  SQSPPTFGFLLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKA 70

Query: 101 QELSALLGCEVDADQVILSHSPMKLFSEYHEKRMLVSGQGPVMENAQGLGFRNVVTVDEL 160
           QELSALLGCEVDADQVILSHSPMKLFSEYHEKRMLVSGQGPVMENAQGLGFRNVVTVDEL
Sbjct: 71  QELSALLGCEVDADQVILSHSPMKLFSEYHEKRMLVSGQGPVMENAQGLGFRNVVTVDEL 130

Query: 161 RMAFPLLDMVDLERRLKTTPLPRNDFPRIEGVLLLGEPVRWETSLQLIMDVLLSNGSPGA 220
           RMAFPLLDMVDLERRLKTTPLPRNDFPRIEGVLLLGEPVRWETSLQLIMDVLLSNGSPGA
Sbjct: 131 RMAFPLLDMVDLERRLKTTPLPRNDFPRIEGVLLLGEPVRWETSLQLIMDVLLSNGSPGA 190

Query: 221 GLATPPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYQKVTGKELRYEGLMGKP 280
           GLATPPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYQKVTGKELRYEGLMGKP
Sbjct: 191 GLATPPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYQKVTGKELRYEGLMGKP 250

Query: 281 SILTYQYAEDLIRRQAERRGWAAPIRKLYAVGDNPMSDVYGANLFHQYLQKATHDGAPEL 340
           SILTYQYAEDLIRRQAERRGWAAPIRKLYAVGDNPMSDVYGANLFHQYLQKATHDGAPEL
Sbjct: 251 SILTYQYAEDLIRRQAERRGWAAPIRKLYAVGDNPMSDVYGANLFHQYLQKATHDGAPEL 310

Query: 341 GAGGTRQQQPSASQSCISILVCTGVYNPRNPQSTEPVLGGGEPPFHGHRDLCFSPGLMEA 400
           GAGGTRQQQPSASQSCISILVCTGVYNPRNPQSTEPVLGGGEPPFHGHRDLCFSPGLMEA
Sbjct: 311 GAGGTRQQQPSASQSCISILVCTGVYNPRNPQSTEPVLGGGEPPFHGHRDLCFSPGLMEA 370

Query: 401 SHVVNDVNEAVQLVFRKEGWALE 423
           SHVVNDVNEAVQLVFRKEGWALE
Sbjct: 371 SHVVNDVNEAVQLVFRKEGWALE 393


>gi|108796653 phosphoglycolate phosphatase [Homo sapiens]
          Length = 321

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 20  AARAAAGLQGRPARRCYAVGPAQSPPTFGFLLDIDGVLVRGHRVIPAALKAFRRLVNSQG 79
           AA  A G   R  R       A        L D DGVL RG   +P A +A R L  ++G
Sbjct: 2   AAAEAGGDDARCVRLSAERAQALLADVDTLLFDCDGVLWRGETAVPGAPEALRAL-RARG 60

Query: 80  QLRVPVVFVTNAGNILQHSKAQELSAL 106
           +    + F+TN  +  + + A++L  L
Sbjct: 61  K---RLGFITNNSSKTRAAYAEKLRRL 84


>gi|150170725 zinc and ring finger 4 [Homo sapiens]
          Length = 429

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%)

Query: 78  QGQLRVPVVFVTNAGNILQHSKAQELSALLGCEVDADQVILSHSP 122
           +GQ+ +P VFV+ A +       Q+L  +LGC   A  ++L   P
Sbjct: 204 RGQIAIPSVFVSEAAS-------QDLRVILGCNKSAHALLLPDDP 241


>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
           sapiens]
          Length = 870

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 5   GCVAALGAARGLCWRAARA--AAGLQGRPARRCYAVG 39
           G    LG ARG CW+A  A  +  L+GRP R   A G
Sbjct: 445 GETTPLGEARGPCWKARGAVPSGRLRGRPGRVAGASG 481


>gi|46397310 polyamine oxidase isoform 4 [Homo sapiens]
          Length = 486

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 19/146 (13%)

Query: 5   GCVAALGAARGLCWRAARAAAGLQGRPARRCYAVGPAQSPPTFGFLLDIDGVLV----RG 60
           G +A LGAA+ LC  +A     +    AR   A G  +S   FG ++++    +    RG
Sbjct: 21  GGIAGLGAAQRLCGHSAFPHLRVLEATAR---AGGRIRSERCFGGVVEVGAHWIHGPSRG 77

Query: 61  HRVIPAA----------LKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKAQELSALLGCE 110
           + V   A          L    +LV + G + +P V   ++G  +      E++ L    
Sbjct: 78  NPVFQLAAEYGLLGEKELSQENQLVETGGHVGLPSVSYASSGASVSLQLVAEMATLFYGL 137

Query: 111 VDADQVIL--SHSPMKLFSEYHEKRM 134
           +D  +  L  + +P+    EY +K +
Sbjct: 138 IDQTREFLHAAETPVPSVGEYLKKEI 163


>gi|46397308 polyamine oxidase isoform 2 [Homo sapiens]
          Length = 325

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 19/146 (13%)

Query: 5   GCVAALGAARGLCWRAARAAAGLQGRPARRCYAVGPAQSPPTFGFLLDIDGVLV----RG 60
           G +A LGAA+ LC  +A     +    AR   A G  +S   FG ++++    +    RG
Sbjct: 21  GGIAGLGAAQRLCGHSAFPHLRVLEATAR---AGGRIRSERCFGGVVEVGAHWIHGPSRG 77

Query: 61  HRVIPAA----------LKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKAQELSALLGCE 110
           + V   A          L    +LV + G + +P V   ++G  +      E++ L    
Sbjct: 78  NPVFQLAAEYGLLGEKELSQENQLVETGGHVGLPSVSYASSGASVSLQLVAEMATLFYGL 137

Query: 111 VDADQVIL--SHSPMKLFSEYHEKRM 134
           +D  +  L  + +P+    EY +K +
Sbjct: 138 IDQTREFLHAAETPVPSVGEYLKKEI 163


>gi|23097272 polyamine oxidase isoform 1 [Homo sapiens]
          Length = 511

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 19/146 (13%)

Query: 5   GCVAALGAARGLCWRAARAAAGLQGRPARRCYAVGPAQSPPTFGFLLDIDGVLV----RG 60
           G +A LGAA+ LC  +A     +    AR   A G  +S   FG ++++    +    RG
Sbjct: 21  GGIAGLGAAQRLCGHSAFPHLRVLEATAR---AGGRIRSERCFGGVVEVGAHWIHGPSRG 77

Query: 61  HRVIPAA----------LKAFRRLVNSQGQLRVPVVFVTNAGNILQHSKAQELSALLGCE 110
           + V   A          L    +LV + G + +P V   ++G  +      E++ L    
Sbjct: 78  NPVFQLAAEYGLLGEKELSQENQLVETGGHVGLPSVSYASSGASVSLQLVAEMATLFYGL 137

Query: 111 VDADQVIL--SHSPMKLFSEYHEKRM 134
           +D  +  L  + +P+    EY +K +
Sbjct: 138 IDQTREFLHAAETPVPSVGEYLKKEI 163


>gi|10092677 pyridoxal phosphatase [Homo sapiens]
          Length = 296

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 48 GFLLDIDGVLVRGHRVIPAALKAFRRLVNS 77
          G L D DGVL  G R +P A +   RL  +
Sbjct: 21 GVLFDCDGVLWNGERAVPGAPELLERLARA 50


>gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo
           sapiens]
          Length = 623

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 40  PAQSPPTFG-------FLLDIDGVLVRGHRVIPAALKAFRRLVNSQGQLRVPVVFVT 89
           PA  PP FG        +L++ G  +R H+ + AA   + R   S+  LRV  V +T
Sbjct: 126 PAPVPPGFGAVYGEPDLVLEVSGRRLRAHKAVLAARSDYFRARASRDVLRVQGVSLT 182


>gi|40807463 zinc finger protein 339 [Homo sapiens]
          Length = 275

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 297 ERRGWAAPIRKLYAVGDNPMSDVYG----ANLFHQYLQKATHDGAPELGAGGTRQQQPSA 352
           +RR     +R    + D   +D Y       L H   +    DG    G+G +   +P  
Sbjct: 8   KRRSLGVSVRSWDELPDEKRADTYIPVGLGRLLHDPPEDCRSDGGSSSGSGSSSAGEPGG 67

Query: 353 SQSCISILVCTGVYNPRNPQSTEPVLGGGEPPFHGH 388
           ++S  S         P  P+S  P  G  E P  GH
Sbjct: 68  AESSSS---------PHAPESETPEPGDAEGP-DGH 93


>gi|155969701 espin-like [Homo sapiens]
          Length = 1005

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 8   AALGAARGLCWRAARAAAGLQGRPARRCYAVGPAQSPPTFGFLLDIDGVLVRGH 61
           AA G+   LCW       GLQ + A     V P      FG  + ++ +L  GH
Sbjct: 78  AATGSLAELCWLVREGGCGLQDQDAS---GVSPLHLAARFGHPVLVEWLLHEGH 128


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,869,966
Number of Sequences: 37866
Number of extensions: 875263
Number of successful extensions: 2038
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2033
Number of HSP's gapped (non-prelim): 13
length of query: 423
length of database: 18,247,518
effective HSP length: 105
effective length of query: 318
effective length of database: 14,271,588
effective search space: 4538364984
effective search space used: 4538364984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.