Search of human proteins with 148596938

Search of human proteins with 148596938

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148596938 stearoyl-CoA desaturase 5 isoform b [Homo sapiens]
         (256 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148596938 stearoyl-CoA desaturase 5 isoform b [Homo sapiens]       531   e-151
gi|148596961 stearoyl-CoA desaturase 5 isoform a [Homo sapiens]       392   e-109
gi|53759151 stearoyl-CoA desaturase 1 [Homo sapiens]                  221   5e-58
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]            33   0.32 
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]            33   0.32 
gi|24308227 zinc finger protein 687 [Homo sapiens]                     32   0.71 
gi|153251840 zinc finger protein 839 [Homo sapiens]                    29   3.5  
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    29   4.6  
gi|114155133 dynein, axonemal, heavy chain 9 isoform 2 [Homo sap...    28   7.8  

>gi|148596938 stearoyl-CoA desaturase 5 isoform b [Homo sapiens]
          Length = 256

 Score =  531 bits (1367), Expect = e-151
 Identities = 256/256 (100%), Positives = 256/256 (100%)

Query: 1   MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA 60
           MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA
Sbjct: 1   MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA 60

Query: 61  VYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAF 120
           VYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAF
Sbjct: 61  VYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAF 120

Query: 121 QNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLL 180
           QNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLL
Sbjct: 121 QNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLL 180

Query: 181 ADPVVRIQRNTQHIQKEGRALNQEAACEMLREWHQGHILKVTLPGLHILALLHTHCNHSE 240
           ADPVVRIQRNTQHIQKEGRALNQEAACEMLREWHQGHILKVTLPGLHILALLHTHCNHSE
Sbjct: 181 ADPVVRIQRNTQHIQKEGRALNQEAACEMLREWHQGHILKVTLPGLHILALLHTHCNHSE 240

Query: 241 KCCLMLRALSVSLEVF 256
           KCCLMLRALSVSLEVF
Sbjct: 241 KCCLMLRALSVSLEVF 256


>gi|148596961 stearoyl-CoA desaturase 5 isoform a [Homo sapiens]
          Length = 330

 Score =  392 bits (1006), Expect = e-109
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA 60
           MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA
Sbjct: 1   MPGPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA 60

Query: 61  VYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAF 120
           VYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAF
Sbjct: 61  VYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAKLPLRIFLAVANSMAF 120

Query: 121 QNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLL 180
           QNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLL
Sbjct: 121 QNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLL 180

Query: 181 ADPVVRIQR 189
           ADPVVRIQR
Sbjct: 181 ADPVVRIQR 189


>gi|53759151 stearoyl-CoA desaturase 1 [Homo sapiens]
          Length = 359

 Score =  221 bits (563), Expect = 5e-58
 Identities = 98/144 (68%), Positives = 121/144 (84%)

Query: 46  VWRNVVLMSLLHLGAVYSLVLIPKAKPLTLLWAYFCFLLAALGVTAGAHRLWSHRSYRAK 105
           VWRN++LMSLLHLGA+Y + LIP  K  T LW  F + ++ALG+TAGAHRLWSHRSY+A+
Sbjct: 72  VWRNIILMSLLHLGALYGITLIPTCKFYTWLWGVFYYFVSALGITAGAHRLWSHRSYKAR 131

Query: 106 LPLRIFLAVANSMAFQNDIFEWSRDHRAHHKYSETDADPHNARRGFFFSHIGWLFVRKHR 165
           LPLR+FL +AN+MAFQND++EW+RDHRAHHK+SET ADPHN+RRGFFFSH+GWL VRKH 
Sbjct: 132 LPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHP 191

Query: 166 DVIEKGRKLDVTDLLADPVVRIQR 189
            V EKG  LD++DL A+ +V  QR
Sbjct: 192 AVKEKGSTLDLSDLEAEKLVMFQR 215


>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 32.7 bits (73), Expect = 0.32
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 16  AKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA 60
           A+EE  AG   S G GG ERP ARG  Q      ++L S + L A
Sbjct: 231 AREEAAAG---SRGRGGAERPAARGSAQQPPLARLLLASAVSLAA 272


>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 32.7 bits (73), Expect = 0.32
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 16  AKEEIRAGLESSEGGGGPERPGARGQRQNIVWRNVVLMSLLHLGA 60
           A+EE  AG   S G GG ERP ARG  Q      ++L S + L A
Sbjct: 231 AREEAAAG---SRGRGGAERPAARGSAQQPPLARLLLASAVSLAA 272


>gi|24308227 zinc finger protein 687 [Homo sapiens]
          Length = 1237

 Score = 31.6 bits (70), Expect = 0.71
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 11 IPFCDAKEEIRAGLESSEGGGGPERP 36
          IP  DA E I +G E +EG GGP +P
Sbjct: 18 IPDIDANEAIHSGPEENEGPGGPGKP 43


>gi|153251840 zinc finger protein 839 [Homo sapiens]
          Length = 927

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 15 DAKEEIRAGLESSEGGGGPERPGARG 40
          DA+ E   G E   GGGGP  PG  G
Sbjct: 3  DAEPEAGGGSEDGGGGGGPAPPGQSG 28


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 3   GPATDAGKIPFCDAKEEIRAGLESSEGGGGPERPGARGQRQNIV 46
           GPA  A   P   A E   AG  +  GGGGP+RPG    R+ +V
Sbjct: 74  GPAAPAEGAPGA-APEPPPAG-RARPGGGGPQRPGPPSPRRPLV 115


>gi|114155133 dynein, axonemal, heavy chain 9 isoform 2 [Homo
           sapiens]
          Length = 4486

 Score = 28.1 bits (61), Expect = 7.8
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 12/61 (19%)

Query: 20  IRAGLESSEGGG------------GPERPGARGQRQNIVWRNVVLMSLLHLGAVYSLVLI 67
           IR GLE     G            GPE PG    R  +V  ++    L HL A++S V++
Sbjct: 83  IRPGLEVGPESGLAGAKALFFLRTGPEPPGPDSFRGAVVCGDLPAAPLEHLAALFSEVVL 142

Query: 68  P 68
           P
Sbjct: 143 P 143


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,434,289
Number of Sequences: 37866
Number of extensions: 461532
Number of successful extensions: 1572
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1564
Number of HSP's gapped (non-prelim): 10
length of query: 256
length of database: 18,247,518
effective HSP length: 100
effective length of query: 156
effective length of database: 14,460,918
effective search space: 2255903208
effective search space used: 2255903208
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.