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Search of human proteins with 147901293
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|147901293 secretoglobin, family 1C, member 1-like [Homo
sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|147901293 secretoglobin, family 1C, member 1-like [Homo sapiens] 191 1e-49
gi|153252157 secretoglobin, family 1C, member 1 [Homo sapiens] 188 9e-49
gi|4507809 secretoglobin, family 1A, member 1 (uteroglobin) [Hom... 37 0.004
gi|110825988 TAR RNA binding protein 1 [Homo sapiens] 28 2.1
gi|5729907 lipophilin A precursor [Homo sapiens] 28 2.1
gi|31657114 armadillo repeat containing 4 [Homo sapiens] 27 3.5
gi|227498224 beta-1,4-N-acetyl-galactosaminyl transferase 2 isof... 26 6.0
gi|227497758 beta-1,4-N-acetyl-galactosaminyl transferase 2 isof... 26 6.0
gi|227497754 beta-1,4-N-acetyl-galactosaminyl transferase 2 isof... 26 6.0
gi|78190478 Kv channel interacting protein 1 isoform 3 [Homo sap... 26 7.8
gi|78190480 Kv channel interacting protein 1 isoform 1 [Homo sap... 26 7.8
gi|7657247 Kv channel interacting protein 1 isoform 2 [Homo sapi... 26 7.8
gi|122937195 plasma membrane associated protein, S3-12 [Homo sap... 26 7.8
>gi|147901293 secretoglobin, family 1C, member 1-like [Homo
sapiens]
Length = 95
Score = 191 bits (485), Expect = 1e-49
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK 60
MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK
Sbjct: 1 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK 60
Query: 61 AAMTELKSCRDGLQPMHKAELVKLLVQVLGSQDGA 95
AAMTELKSCRDGLQPMHKAELVKLLVQVLGSQDGA
Sbjct: 61 AAMTELKSCRDGLQPMHKAELVKLLVQVLGSQDGA 95
>gi|153252157 secretoglobin, family 1C, member 1 [Homo sapiens]
Length = 95
Score = 188 bits (477), Expect = 9e-49
Identities = 94/95 (98%), Positives = 94/95 (98%)
Query: 1 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK 60
MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK
Sbjct: 1 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK 60
Query: 61 AAMTELKSCRDGLQPMHKAELVKLLVQVLGSQDGA 95
AAMTELKSC DGLQPMHKAELVKLLVQVLGSQDGA
Sbjct: 61 AAMTELKSCIDGLQPMHKAELVKLLVQVLGSQDGA 95
>gi|4507809 secretoglobin, family 1A, member 1 (uteroglobin) [Homo
sapiens]
Length = 91
Score = 36.6 bits (83), Expect = 0.004
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 6 ALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAMTE 65
A+ L +TL C A+ E F ++TLL+ TP YE + ++ ++D + A +
Sbjct: 4 AVTLTLVTLALCCSSASAEICPSF-QRVIETLLMDTPSS-YEAAMELFSPDQDMREAGAQ 61
Query: 66 LKSCRDGLQPMHKAELVKLLVQVLGS 91
LK D L + ++KL+ ++ S
Sbjct: 62 LKKLVDTLPQKPRESIIKLMEKIAQS 87
>gi|110825988 TAR RNA binding protein 1 [Homo sapiens]
Length = 1621
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 1 MKGSRALLLVALTLFCICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAK 60
+K R L L+ L L CR+ D+ LQ + T E + E L + +NE
Sbjct: 686 LKTDRCLQLL-LKLLNTCRLKGSSAQDDEVSTVLQNFFMSTTESISEFILRRLTMNE--L 742
Query: 61 AAMTELKSCRDGLQPMHKAELVKLLVQV 88
++++L C L M EL+ L ++V
Sbjct: 743 NSVSDLDRCH--LYLMVLTELINLHLKV 768
>gi|5729907 lipophilin A precursor [Homo sapiens]
Length = 90
Score = 27.7 bits (60), Expect = 2.1
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 1 MKGSRALLLVALTLFC------ICRMATGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYN 54
M+ S LLL+ L L C +C+ A G + F LL G P +++ L K+
Sbjct: 1 MRLSVCLLLLTLALCCYRANAVVCQ-ALGSEITGF-------LLAGKP--VFKFQLAKFK 50
Query: 55 VNEDAKAAMTELKSCRDGLQPMHKAELVKLLVQV 88
+A AA E+K C D + + + K L ++
Sbjct: 51 APLEAVAAKMEVKKCVDTMAYEKRVLITKTLGKI 84
>gi|31657114 armadillo repeat containing 4 [Homo sapiens]
Length = 1044
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 54 NVNEDAKAAMTELKSCRDGLQPMHKAELVKLLVQVLGSQD 93
NV+ A+ +L D MH+ VKLL+ ++GS D
Sbjct: 978 NVHRATAQALYQLSEDADNCITMHENGAVKLLLDMVGSPD 1017
>gi|227498224 beta-1,4-N-acetyl-galactosaminyl transferase 2 isoform
b [Homo sapiens]
Length = 506
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 26 NDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAM 63
+ EFF+D L TLLVG+ E+ G + V + AA+
Sbjct: 437 HSEFFIDGLGTLLVGSCPEVIIGHQSRSPVVDSELAAL 474
>gi|227497758 beta-1,4-N-acetyl-galactosaminyl transferase 2 isoform
c [Homo sapiens]
Length = 480
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 26 NDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAM 63
+ EFF+D L TLLVG+ E+ G + V + AA+
Sbjct: 411 HSEFFIDGLGTLLVGSCPEVIIGHQSRSPVVDSELAAL 448
>gi|227497754 beta-1,4-N-acetyl-galactosaminyl transferase 2 isoform
a [Homo sapiens]
Length = 566
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 26 NDEFFMDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAM 63
+ EFF+D L TLLVG+ E+ G + V + AA+
Sbjct: 497 HSEFFIDGLGTLLVGSCPEVIIGHQSRSPVVDSELAAL 534
>gi|78190478 Kv channel interacting protein 1 isoform 3 [Homo
sapiens]
Length = 225
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 22 TGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNED 58
TG E F+ L LL GT E T Y++N+D
Sbjct: 112 TGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKD 148
>gi|78190480 Kv channel interacting protein 1 isoform 1 [Homo
sapiens]
Length = 227
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 22 TGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNED 58
TG E F+ L LL GT E T Y++N+D
Sbjct: 114 TGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKD 150
>gi|7657247 Kv channel interacting protein 1 isoform 2 [Homo
sapiens]
Length = 216
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 22 TGEDNDEFFMDFLQTLLVGTPEELYEGTLGKYNVNED 58
TG E F+ L LL GT E T Y++N+D
Sbjct: 103 TGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKD 139
>gi|122937195 plasma membrane associated protein, S3-12 [Homo
sapiens]
Length = 1357
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 31 MDFLQTLLVGTPEELYEGTLGKYNVNEDAKAAMTELKSCRD 71
MD +T+L GT + +Y G NV + A T LK+ ++
Sbjct: 606 MDTTKTVLTGTKDTIYSGVTSAVNVAKG--AVQTGLKTTQN 644
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,300,406
Number of Sequences: 37866
Number of extensions: 116051
Number of successful extensions: 294
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 13
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.