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Search of human proteins with 9966779
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9966779 eukaryotic translation initiation factor 2B, subunit
3 gamma [Homo sapiens]
(452 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9966779 eukaryotic translation initiation factor 2B, subunit ... 894 0.0
gi|83267879 eukaryotic translation initiation factor 2B, subunit... 52 1e-06
gi|11761619 GDP-mannose pyrophosphorylase B isoform 1 [Homo sapi... 48 2e-05
gi|11761621 GDP-mannose pyrophosphorylase B isoform 2 [Homo sapi... 48 2e-05
gi|31881779 GDP-mannose pyrophosphorylase A [Homo sapiens] 36 0.082
gi|45447090 GDP-mannose pyrophosphorylase A [Homo sapiens] 36 0.082
gi|157412259 notch1-induced protein isoform a [Homo sapiens] 34 0.31
gi|157671913 notch1-induced protein isoform b [Homo sapiens] 34 0.31
gi|11225607 interleukin 1 receptor accessory protein-like 2 [Hom... 32 1.5
gi|145301607 thyroid adenoma associated [Homo sapiens] 30 3.4
gi|38348727 thyroid adenoma associated [Homo sapiens] 30 3.4
gi|229093087 G protein-coupled receptor 97 [Homo sapiens] 30 4.5
gi|117414135 apoptosis inhibitor [Homo sapiens] 30 4.5
gi|126116565 MYC binding protein 2 [Homo sapiens] 29 10.0
gi|170016077 ATPase type 13A1 [Homo sapiens] 29 10.0
gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens] 29 10.0
gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens] 29 10.0
>gi|9966779 eukaryotic translation initiation factor 2B, subunit 3
gamma [Homo sapiens]
Length = 452
Score = 894 bits (2309), Expect = 0.0
Identities = 452/452 (100%), Positives = 452/452 (100%)
Query: 1 MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTRDVQ 60
MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTRDVQ
Sbjct: 1 MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTRDVQ 60
Query: 61 KALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEVVDL 120
KALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEVVDL
Sbjct: 61 KALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEVVDL 120
Query: 121 FRAYDASLAMLMRKGQDSIEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEEL 180
FRAYDASLAMLMRKGQDSIEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEEL
Sbjct: 121 FRAYDASLAMLMRKGQDSIEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEEL 180
Query: 181 VIKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLMENGSITSIRSELIPYLVRKQFSSA 240
VIKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLMENGSITSIRSELIPYLVRKQFSSA
Sbjct: 181 VIKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLMENGSITSIRSELIPYLVRKQFSSA 240
Query: 241 SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRC 300
SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRC
Sbjct: 241 SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRC 300
Query: 301 YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVSKHLVGVDSLIGP 360
YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVSKHLVGVDSLIGP
Sbjct: 301 YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVSKHLVGVDSLIGP 360
Query: 361 ETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEKGAD 420
ETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEKGAD
Sbjct: 361 ETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEKGAD 420
Query: 421 IKDCLIGSGQRIEAKAKRVNEVIVGNDQLMEI 452
IKDCLIGSGQRIEAKAKRVNEVIVGNDQLMEI
Sbjct: 421 IKDCLIGSGQRIEAKAKRVNEVIVGNDQLMEI 452
>gi|83267879 eukaryotic translation initiation factor 2B, subunit 5
epsilon, 82kDa [Homo sapiens]
Length = 721
Score = 51.6 bits (122), Expect = 1e-06
Identities = 93/433 (21%), Positives = 159/433 (36%), Gaps = 64/433 (14%)
Query: 4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTRDVQKAL 63
QAV++A R ++ P+ LLP+ N LI Y L L G +E V + A
Sbjct: 44 QAVLVADSFDRRFFPISKDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCC--WKAAQ 101
Query: 64 CAEFKMKMK-------PDIVCIPDDADMGTADSLRYIYPK--LKTDVLVLSCDLITDVAL 114
E +K K + I + D LR + K +++D L++ D+I+++ +
Sbjct: 102 IKEHLLKSKWCRPTSLNVVRIITSELYRSLGDVLRDVDAKALVRSDFLLVYGDVISNINI 161
Query: 115 HEVVD---LFRAYDASLAMLMRKGQDSIEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMA 171
++ L R + +++++ ++S P + E + VDST R+L
Sbjct: 162 TRALEEHRLRRKLEKNVSVMTMIFKESSPSHP-----TRCHEDNVVVAVDSTTNRVLHFQ 216
Query: 172 NEADLDEELVIKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLMENGSITSIRSELIPY 231
L + L+D H+ + +N Y
Sbjct: 217 KTQGLRRFAFPLSLFQGSSDGVEVRYDLLDCHISICSPQVAQLFTDN----------FDY 266
Query: 232 LVRKQFSSASSQQGQEEKEEDLKKKELKSLDIYSFIKE--ANTLNLAPYDACWNACRGDR 289
R F +G EE L + + ++ KE A NL Y A
Sbjct: 267 QTRDDF-----VRGLLVNEEILGNQ----IHMHVTAKEYGARVSNLHMYSA--------- 308
Query: 290 WEDLSRSQVRCYVHIMKEGLCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVSK 349
+ +R +V+ + ST + + + PE H S
Sbjct: 309 ---VCADVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYR-----GPEVSLGHGS------ 354
Query: 350 HLVGVDSLIGPETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVI 409
++ + L+G T IG I SVIG C I D V + L V V G+ I S++
Sbjct: 355 -ILEENVLLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAAGAQIHQSLL 413
Query: 410 CNNAVIEKGADIK 422
C+NA +++ +K
Sbjct: 414 CDNAEVKERVTLK 426
>gi|11761619 GDP-mannose pyrophosphorylase B isoform 1 [Homo
sapiens]
Length = 387
Score = 47.8 bits (112), Expect = 2e-05
Identities = 35/140 (25%), Positives = 71/140 (50%), Gaps = 7/140 (5%)
Query: 4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVT---TRDVQ 60
+A+++ G G+R+ LT S PKPL+ NKP++ + + L G + VI+ ++ ++
Sbjct: 2 KALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVLE 61
Query: 61 KALCAEFKMKMKPDIVCIPDDADMGTADSL---RYIYPKLKTDVLVLSCDLITDVALHEV 117
K + A+ + ++ I ++ +GTA L R + + VL+ D+I D +
Sbjct: 62 KEMKAQ-EQRLGIRISMSHEEEPLGTAGPLALARDLLSETADPFFVLNSDVICDFPFQAM 120
Query: 118 VDLFRAYDASLAMLMRKGQD 137
V R + ++L+ K ++
Sbjct: 121 VQFHRHHGQEGSILVTKVEE 140
>gi|11761621 GDP-mannose pyrophosphorylase B isoform 2 [Homo
sapiens]
Length = 360
Score = 47.8 bits (112), Expect = 2e-05
Identities = 35/140 (25%), Positives = 71/140 (50%), Gaps = 7/140 (5%)
Query: 4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVT---TRDVQ 60
+A+++ G G+R+ LT S PKPL+ NKP++ + + L G + VI+ ++ ++
Sbjct: 2 KALILVGGYGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAAGVDHVILAVSYMSQVLE 61
Query: 61 KALCAEFKMKMKPDIVCIPDDADMGTADSL---RYIYPKLKTDVLVLSCDLITDVALHEV 117
K + A+ + ++ I ++ +GTA L R + + VL+ D+I D +
Sbjct: 62 KEMKAQ-EQRLGIRISMSHEEEPLGTAGPLALARDLLSETADPFFVLNSDVICDFPFQAM 120
Query: 118 VDLFRAYDASLAMLMRKGQD 137
V R + ++L+ K ++
Sbjct: 121 VQFHRHHGQEGSILVTKVEE 140
Score = 29.6 bits (65), Expect = 5.9
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 375 IGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEKGADIKDCLIGSGQRIEA 434
IG +C I V+ L V VE+G I+ + +A I + ++ C++G R+
Sbjct: 262 IGQNCSIGPNVS-----LGPGVVVEDGVCIRRCTVLRDARIRSHSWLESCIVGWRCRVGQ 316
Query: 435 KAKRVNEVIVGNDQLM 450
+ N ++G D ++
Sbjct: 317 WVRMENVTVLGEDVIV 332
>gi|31881779 GDP-mannose pyrophosphorylase A [Homo sapiens]
Length = 420
Score = 35.8 bits (81), Expect = 0.082
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 7 VMAVGG---GSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERV-GFEEVIVV-------T 55
V+ +GG G+R L+ +PKPL PV P+I + + +V G +E++++
Sbjct: 5 VILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEP 64
Query: 56 TRDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTD----VLVLSCDLITD 111
+A EF + ++ + + A +GT L + ++ VL+ D+ +D
Sbjct: 65 LTQFLEAAQQEFNLPVR----YLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSD 120
Query: 112 VALHEVVDLFR 122
L +++ R
Sbjct: 121 FPLSAMLEAHR 131
Score = 30.4 bits (67), Expect = 3.4
Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 37/144 (25%)
Query: 297 QVRCYVHIMKEGLCSRVSTLGLYMEANRQV--------PKLLSALCPEEPPVHSSAQIVS 348
Q + YVH+ +G+ S++ + G + A+R P+ L+ P P + + I
Sbjct: 233 QGQIYVHLT-DGIWSQIKSAGSALYASRLYLSRYQDTHPERLAKHTPGGPWIRGNVYIHP 291
Query: 349 KHLVGVDSLIGPETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSV 408
V +++GP IG+ VTV EG ++ S+
Sbjct: 292 TAKVAPSAVLGPNVSIGK----------------------------GVTVGEGVRLRESI 323
Query: 409 ICNNAVIEKGADIKDCLIGSGQRI 432
+ + A +++ + ++G G +
Sbjct: 324 VLHGATLQEHTCVLHSIVGWGSTV 347
>gi|45447090 GDP-mannose pyrophosphorylase A [Homo sapiens]
Length = 420
Score = 35.8 bits (81), Expect = 0.082
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 7 VMAVGG---GSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERV-GFEEVIVV-------T 55
V+ +GG G+R L+ +PKPL PV P+I + + +V G +E++++
Sbjct: 5 VILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEP 64
Query: 56 TRDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTD----VLVLSCDLITD 111
+A EF + ++ + + A +GT L + ++ VL+ D+ +D
Sbjct: 65 LTQFLEAAQQEFNLPVR----YLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSD 120
Query: 112 VALHEVVDLFR 122
L +++ R
Sbjct: 121 FPLSAMLEAHR 131
Score = 30.4 bits (67), Expect = 3.4
Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 37/144 (25%)
Query: 297 QVRCYVHIMKEGLCSRVSTLGLYMEANRQV--------PKLLSALCPEEPPVHSSAQIVS 348
Q + YVH+ +G+ S++ + G + A+R P+ L+ P P + + I
Sbjct: 233 QGQIYVHLT-DGIWSQIKSAGSALYASRLYLSRYQDTHPERLAKHTPGGPWIRGNVYIHP 291
Query: 349 KHLVGVDSLIGPETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSV 408
V +++GP IG+ VTV EG ++ S+
Sbjct: 292 TAKVAPSAVLGPNVSIGK----------------------------GVTVGEGVRLRESI 323
Query: 409 ICNNAVIEKGADIKDCLIGSGQRI 432
+ + A +++ + ++G G +
Sbjct: 324 VLHGATLQEHTCVLHSIVGWGSTV 347
>gi|157412259 notch1-induced protein isoform a [Homo sapiens]
Length = 451
Score = 33.9 bits (76), Expect = 0.31
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 5 AVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVT----TRDVQ 60
AV+ A G G RM T PK P+ +PLI Y L LERV + + IVV +V
Sbjct: 49 AVLPAGGCGERMGVPT---PKQFCPILERPLISYTLQALERVCWIKDIVVAVTGENMEVM 105
Query: 61 KALCAEFKMK 70
K++ +++ K
Sbjct: 106 KSIIQKYQHK 115
>gi|157671913 notch1-induced protein isoform b [Homo sapiens]
Length = 401
Score = 33.9 bits (76), Expect = 0.31
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 5 AVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVT----TRDVQ 60
AV+ A G G RM T PK P+ +PLI Y L LERV + + IVV +V
Sbjct: 49 AVLPAGGCGERMGVPT---PKQFCPILERPLISYTLQALERVCWIKDIVVAVTGENMEVM 105
Query: 61 KALCAEFKMK 70
K++ +++ K
Sbjct: 106 KSIIQKYQHK 115
>gi|11225607 interleukin 1 receptor accessory protein-like 2 [Homo
sapiens]
Length = 686
Score = 31.6 bits (70), Expect = 1.5
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 27/131 (20%)
Query: 162 STGKRLLFMANEADLDEELVIKGSILQK-HPRIRFH----------TGLVDAHLYCLKKY 210
STG RL++ N+ DL+E ++ + K I FH T ++ YC+K
Sbjct: 69 STGLRLMWYKNKGDLEEPIIFSEVRMSKEEDSIWFHSAEAQDSGFYTCVLRNSTYCMKVS 128
Query: 211 IVDFLMENGSITSIRSELIPYLVRKQFSSASSQQGQEEKEEDLKKKELKSLDIYSFIKEA 270
+ + EN S S I YL EK E K+KE+ D+ F K
Sbjct: 129 MSLTVAENESGLCYNSR-IRYL---------------EKSEVTKRKEISCPDMDDFKKSD 172
Query: 271 NTLNLAPYDAC 281
++ Y C
Sbjct: 173 QEPDVVWYKEC 183
>gi|145301607 thyroid adenoma associated [Homo sapiens]
Length = 1953
Score = 30.4 bits (67), Expect = 3.4
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 24/125 (19%)
Query: 208 KKYIVDFLMENGSITSIRSELIPYLVRKQFSSASSQQGQEEKEEDLKKKELKSLDIYSFI 267
K Y++D+ + + S E + Y+V+ +S ++ GQE+ L +
Sbjct: 542 KSYVIDYYLPK--LLSYSPESLQYMVKILQTSIDAKTGQEQSFPSLGSCNSRGA------ 593
Query: 268 KEANTLNLAPYDACWNACRG--------DRWEDLSRSQVRCYVHIMKEGLCSRVSTLGLY 319
L AC R D WE+L S R ++ + R+ TLGL
Sbjct: 594 -------LGALMACLRIARAHGHLQSATDTWENLV-SDARIKQGLIHQHCQVRIDTLGLL 645
Query: 320 MEANR 324
E+NR
Sbjct: 646 CESNR 650
>gi|38348727 thyroid adenoma associated [Homo sapiens]
Length = 1953
Score = 30.4 bits (67), Expect = 3.4
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 24/125 (19%)
Query: 208 KKYIVDFLMENGSITSIRSELIPYLVRKQFSSASSQQGQEEKEEDLKKKELKSLDIYSFI 267
K Y++D+ + + S E + Y+V+ +S ++ GQE+ L +
Sbjct: 542 KSYVIDYYLPK--LLSYSPESLQYMVKILQTSIDAKTGQEQSFPSLGSCNSRGA------ 593
Query: 268 KEANTLNLAPYDACWNACRG--------DRWEDLSRSQVRCYVHIMKEGLCSRVSTLGLY 319
L AC R D WE+L S R ++ + R+ TLGL
Sbjct: 594 -------LGALMACLRIARAHGHLQSATDTWENLV-SDARIKQGLIHQHCQVRIDTLGLL 645
Query: 320 MEANR 324
E+NR
Sbjct: 646 CESNR 650
>gi|229093087 G protein-coupled receptor 97 [Homo sapiens]
Length = 549
Score = 30.0 bits (66), Expect = 4.5
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 245 GQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNACRGD-----RWEDLSRSQVR 299
GQE+ E + L S ++Y NL C+ CR E+L R +
Sbjct: 20 GQEKPTEGPRNTCLGSNNMYDIF------NLNDKALCFTKCRQSGSDSCNVENLQRYWLN 73
Query: 300 CYVHIMKEGLCSRVST 315
H+MKEGL +V+T
Sbjct: 74 YEAHLMKEGLTQKVNT 89
>gi|117414135 apoptosis inhibitor [Homo sapiens]
Length = 127
Score = 30.0 bits (66), Expect = 4.5
Identities = 18/83 (21%), Positives = 35/83 (42%)
Query: 58 DVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEV 117
++ LC E + KM DD+ +G S ++ ++ S D++T+ L E
Sbjct: 10 EITNGLCLEVEQKMLSKTTGNTDDSLIGRNSSSESTEDEVTESTIITSVDIVTNHHLQES 69
Query: 118 VDLFRAYDASLAMLMRKGQDSIE 140
+ AY + M+ + +E
Sbjct: 70 IFTKEAYKKYIKDYMKSINEKLE 92
>gi|126116565 MYC binding protein 2 [Homo sapiens]
Length = 4640
Score = 28.9 bits (63), Expect = 10.0
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 238 SSASSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPY 278
SS +SQQ EEKE LK + SL+I S + N N+AP+
Sbjct: 3032 SSLNSQQPTEEKETKLKNRH--SLEISSAL---NMFNIAPH 3067
>gi|170016077 ATPase type 13A1 [Homo sapiens]
Length = 1204
Score = 28.9 bits (63), Expect = 10.0
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 296 SQVRCYVHIMKEGLCSRVSTLGLY 319
S ++C H++K+G C+ V+TL ++
Sbjct: 965 SSIQCICHVIKQGRCTLVTTLQMF 988
>gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens]
Length = 971
Score = 28.9 bits (63), Expect = 10.0
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 208 KKYIVDFLMENGSITSIRSELIPYLVRKQFSSASSQQGQEEKEEDLKKK 256
KK I D+ + S + L R Q +A S Q +EKE DL+K+
Sbjct: 122 KKLIEDYEGKLNKAQSFYERELDTLKRSQLFTAESLQASKEKEADLRKE 170
>gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]
Length = 1140
Score = 28.9 bits (63), Expect = 10.0
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 208 KKYIVDFLMENGSITSIRSELIPYLVRKQFSSASSQQGQEEKEEDLKKK 256
KK I D+ + S + L R Q +A S Q +EKE DL+K+
Sbjct: 242 KKLIEDYEGKLNKAQSFYERELDTLKRSQLFTAESLQASKEKEADLRKE 290
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,081,418
Number of Sequences: 37866
Number of extensions: 688172
Number of successful extensions: 2081
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2049
Number of HSP's gapped (non-prelim): 35
length of query: 452
length of database: 18,247,518
effective HSP length: 106
effective length of query: 346
effective length of database: 14,233,722
effective search space: 4924867812
effective search space used: 4924867812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.