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Search of human proteins with 9910372
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9910372 5',3'-nucleotidase, mitochondrial precursor [Homo
sapiens]
(228 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9910372 5',3'-nucleotidase, mitochondrial precursor [Homo sap... 478 e-135
gi|7657033 5',3'-nucleotidase, cytosolic [Homo sapiens] 260 6e-70
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 30 2.2
gi|33188443 microfilament and actin filament cross-linker protei... 29 2.9
gi|33188445 microfilament and actin filament cross-linker protei... 29 2.9
gi|66730423 hypothetical protein LOC389384 [Homo sapiens] 29 2.9
gi|239757759 PREDICTED: hypothetical protein XP_002346331 [Homo ... 28 8.5
gi|239752271 PREDICTED: hypothetical protein [Homo sapiens] 28 8.5
gi|239746784 PREDICTED: hypothetical protein XP_002343849 [Homo ... 28 8.5
gi|195539372 ADAM metallopeptidase with thrombospondin type 1 mo... 28 8.5
>gi|9910372 5',3'-nucleotidase, mitochondrial precursor [Homo
sapiens]
Length = 228
Score = 478 bits (1230), Expect = e-135
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MIRLGGWCARRLCSAAVPAGRRGAAGGLGLAGGRALRVLVDMDGVLADFEGGFLRKFRAR 60
MIRLGGWCARRLCSAAVPAGRRGAAGGLGLAGGRALRVLVDMDGVLADFEGGFLRKFRAR
Sbjct: 1 MIRLGGWCARRLCSAAVPAGRRGAAGGLGLAGGRALRVLVDMDGVLADFEGGFLRKFRAR 60
Query: 61 FPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGAVEAVKEMAS 120
FPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGAVEAVKEMAS
Sbjct: 61 FPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGAVEAVKEMAS 120
Query: 121 LQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLIDDRPDI 180
LQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLIDDRPDI
Sbjct: 121 LQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLIDDRPDI 180
Query: 181 TGAEPTPSWEHVLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPC 228
TGAEPTPSWEHVLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPC
Sbjct: 181 TGAEPTPSWEHVLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPC 228
>gi|7657033 5',3'-nucleotidase, cytosolic [Homo sapiens]
Length = 201
Score = 260 bits (665), Expect = 6e-70
Identities = 119/193 (61%), Positives = 150/193 (77%)
Query: 34 RALRVLVDMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAI 93
R++RVLVDMDGVLADFE G LR FR RFP++P + LE RRGF EQY LRP L++K
Sbjct: 3 RSVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADKVA 62
Query: 94 SIWESKNFFFELEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGP 153
S++E+ FF +LEP+PGA++AV+EM L +T VFICTSP+ + +C EKY WVE++ GP
Sbjct: 63 SVYEAPGFFLDLEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRWVEQHLGP 122
Query: 154 DFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPSWEHVLFTACHNQHLQLQPPRRRLHS 213
F+E+I+LTRDKTVV DLLIDD+ + G E TPSWEH+LFT CHN+HL L P RRRL S
Sbjct: 123 QFVERIILTRDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPTRRRLLS 182
Query: 214 WADDWKAILDSKR 226
W+D+W+ ILDSKR
Sbjct: 183 WSDNWREILDSKR 195
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 29.6 bits (65), Expect = 2.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 96 WESKNFFFELEPLPGAVEAVKEMASLQ 122
W N FF+++PL + EA KEMA+++
Sbjct: 831 WPWMNLFFKIKPLLKSAEAEKEMATMK 857
>gi|33188443 microfilament and actin filament cross-linker protein
isoform b [Homo sapiens]
Length = 5938
Score = 29.3 bits (64), Expect = 2.9
Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 46/168 (27%)
Query: 96 WESKNFFFE--LEPLPGAVEAVKEMAS--------LQNTDVFICTSP------------- 132
WE+ N ++ LE L A++A + L NT + +CT P
Sbjct: 4638 WENLNKTWKERLEKLEDAMQAAVQYQDTLQAMFDWLDNTVIKLCTMPPVGTDLNTVKDQL 4697
Query: 133 --IKMFKYCPYEKYAWVEK--YFGPDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPS 188
+K FK Y++ +EK + G L++ D+ ++ L E
Sbjct: 4698 NEMKEFKVEVYQQQIEMEKLNHQGELMLKKATDETDRDIIREPL----------TELKHL 4747
Query: 189 WEHVLFTACHNQHL---------QLQPPRRRLHSWADDWKAILDSKRP 227
WE++ H QH Q Q L SW + +LD++RP
Sbjct: 4748 WENLGEKIAHRQHKLEGALLALGQFQHALEELMSWLTHTEELLDAQRP 4795
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 29.3 bits (64), Expect = 2.9
Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 46/168 (27%)
Query: 96 WESKNFFFE--LEPLPGAVEAVKEMAS--------LQNTDVFICTSP------------- 132
WE+ N ++ LE L A++A + L NT + +CT P
Sbjct: 4136 WENLNKTWKERLEKLEDAMQAAVQYQDTLQAMFDWLDNTVIKLCTMPPVGTDLNTVKDQL 4195
Query: 133 --IKMFKYCPYEKYAWVEK--YFGPDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPS 188
+K FK Y++ +EK + G L++ D+ ++ L E
Sbjct: 4196 NEMKEFKVEVYQQQIEMEKLNHQGELMLKKATDETDRDIIREPL----------TELKHL 4245
Query: 189 WEHVLFTACHNQHL---------QLQPPRRRLHSWADDWKAILDSKRP 227
WE++ H QH Q Q L SW + +LD++RP
Sbjct: 4246 WENLGEKIAHRQHKLEGALLALGQFQHALEELMSWLTHTEELLDAQRP 4293
>gi|66730423 hypothetical protein LOC389384 [Homo sapiens]
Length = 652
Score = 29.3 bits (64), Expect = 2.9
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 176 DRPDITGAEPTPSWEHVLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRP 227
DRP G + + SW+ CH L P R+ LH DW DS P
Sbjct: 20 DRPQAPG-KGSESWD------CHWLSLPTAPSRKALHWTTSDWARHSDSPAP 64
>gi|239757759 PREDICTED: hypothetical protein XP_002346331 [Homo
sapiens]
Length = 108
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 5 GGWCARRLCSAAVPAGRRGAAGGLGLAGGRAL 36
GGWC R + V R G +GG GGR L
Sbjct: 34 GGWCGGRTAVSRVKVLRAGGSGG----GGRGL 61
>gi|239752271 PREDICTED: hypothetical protein [Homo sapiens]
Length = 108
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 5 GGWCARRLCSAAVPAGRRGAAGGLGLAGGRAL 36
GGWC R + V R G +GG GGR L
Sbjct: 34 GGWCGGRTAVSRVKVLRAGGSGG----GGRGL 61
>gi|239746784 PREDICTED: hypothetical protein XP_002343849 [Homo
sapiens]
Length = 108
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 5 GGWCARRLCSAAVPAGRRGAAGGLGLAGGRAL 36
GGWC R + V R G +GG GGR L
Sbjct: 34 GGWCGGRTAVSRVKVLRAGGSGG----GGRGL 61
>gi|195539372 ADAM metallopeptidase with thrombospondin type 1
motif, 5 preproprotein [Homo sapiens]
Length = 930
Score = 27.7 bits (60), Expect = 8.5
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 52 GFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEP 107
GF AR+ +P + RG W E+ GR+ S + + ++ + F FE P
Sbjct: 154 GFFAVKHARYTLKPLL-----RGPWAEEEKGRVYGDGSARILHVYTREGFSFEALP 204
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.141 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,785,432
Number of Sequences: 37866
Number of extensions: 435534
Number of successful extensions: 1535
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1530
Number of HSP's gapped (non-prelim): 13
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.