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Search of human proteins with 98162668
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|98162668 hypothetical protein LOC56063 [Homo sapiens]
(140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|98162668 hypothetical protein LOC56063 [Homo sapiens] 271 2e-73
gi|153792564 solute carrier family 47, member 2 isoform 2 [Homo ... 32 0.13
gi|38261960 solute carrier family 47, member 2 isoform 1 [Homo s... 32 0.13
gi|156627569 solute carrier family 34 (sodium phosphate), member... 29 1.1
gi|19743869 Fc alpha receptor isoform h [Homo sapiens] 28 3.2
gi|19743867 Fc alpha receptor isoform g [Homo sapiens] 28 3.2
gi|19743863 Fc alpha receptor isoform e [Homo sapiens] 28 3.2
gi|19743861 Fc alpha receptor isoform d [Homo sapiens] 28 3.2
gi|19743859 Fc alpha receptor isoform c precursor [Homo sapiens] 28 3.2
gi|19743857 Fc alpha receptor isoform b precursor [Homo sapiens] 28 3.2
gi|4503673 Fc alpha receptor isoform a precursor [Homo sapiens] 28 3.2
gi|166197666 putative homeodomain transcription factor 1 [Homo s... 27 7.1
gi|171543850 RUN domain containing 1 [Homo sapiens] 27 7.1
gi|239787844 testis expressed 10 isoform 2 [Homo sapiens] 26 9.3
gi|239787838 testis expressed 10 isoform 1 [Homo sapiens] 26 9.3
gi|4505463 contactin associated protein 1 precursor [Homo sapiens] 26 9.3
gi|157266307 aquaporin 9 [Homo sapiens] 26 9.3
>gi|98162668 hypothetical protein LOC56063 [Homo sapiens]
Length = 140
Score = 271 bits (692), Expect = 2e-73
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MAASLGQVLALVLVAALWGGTQPLLKRASAGLQRVHEPTWAQQLLQEMKTLFLNTEYLMP 60
MAASLGQVLALVLVAALWGGTQPLLKRASAGLQRVHEPTWAQQLLQEMKTLFLNTEYLMP
Sbjct: 1 MAASLGQVLALVLVAALWGGTQPLLKRASAGLQRVHEPTWAQQLLQEMKTLFLNTEYLMP 60
Query: 61 FLLNQCGSLLYYLTLASTDLTLAVPICNSLAIIFTLIVGKALGEDIGGKRAVAGMVLTVI 120
FLLNQCGSLLYYLTLASTDLTLAVPICNSLAIIFTLIVGKALGEDIGGKRAVAGMVLTVI
Sbjct: 61 FLLNQCGSLLYYLTLASTDLTLAVPICNSLAIIFTLIVGKALGEDIGGKRAVAGMVLTVI 120
Query: 121 GISLCITSSVSKTQGQQSTL 140
GISLCITSSVSKTQGQQSTL
Sbjct: 121 GISLCITSSVSKTQGQQSTL 140
>gi|153792564 solute carrier family 47, member 2 isoform 2 [Homo
sapiens]
Length = 566
Score = 32.3 bits (72), Expect = 0.13
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 27/128 (21%)
Query: 32 LQRVHEPTWA---QQLLQEMKTLFLNTEYLMPFLLNQC--------GSLLYYLTLASTDL 80
L+++H TWA Q LQ+ F +P +L C GS L L L+ DL
Sbjct: 233 LKKLHLETWAGWSSQCLQDWGPFF---SLAVPSMLMICVEWWAYEIGSFLMGL-LSVVDL 288
Query: 81 ----------TLAVPICNSLAIIFTLIVGKALG--EDIGGKRAVAGMVLTVIGISLCITS 128
T+ I L+I + VG ALG + + KR+ VL+++GISL + +
Sbjct: 289 SAQAVIYEVATVTYMIPLGLSIGVCVRVGMALGAADTVQAKRSAVSGVLSIVGISLVLGT 348
Query: 129 SVSKTQGQ 136
+S + Q
Sbjct: 349 LISILKNQ 356
>gi|38261960 solute carrier family 47, member 2 isoform 1 [Homo
sapiens]
Length = 602
Score = 32.3 bits (72), Expect = 0.13
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 27/128 (21%)
Query: 32 LQRVHEPTWA---QQLLQEMKTLFLNTEYLMPFLLNQC--------GSLLYYLTLASTDL 80
L+++H TWA Q LQ+ F +P +L C GS L L L+ DL
Sbjct: 269 LKKLHLETWAGWSSQCLQDWGPFF---SLAVPSMLMICVEWWAYEIGSFLMGL-LSVVDL 324
Query: 81 ----------TLAVPICNSLAIIFTLIVGKALG--EDIGGKRAVAGMVLTVIGISLCITS 128
T+ I L+I + VG ALG + + KR+ VL+++GISL + +
Sbjct: 325 SAQAVIYEVATVTYMIPLGLSIGVCVRVGMALGAADTVQAKRSAVSGVLSIVGISLVLGT 384
Query: 129 SVSKTQGQ 136
+S + Q
Sbjct: 385 LISILKNQ 392
>gi|156627569 solute carrier family 34 (sodium phosphate), member 1
[Homo sapiens]
Length = 639
Score = 29.3 bits (64), Expect = 1.1
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 36 HEPTWAQQLLQEMKTLFLNTEYLMPFLLNQCGSLLYYLTLASTDLTLAVPICNSLAIIFT 95
HEP A+ L+E + E + L Q G++L + L T L L V + L+ F
Sbjct: 71 HEPLPAKLALEEEQ----KPESRLVPKLRQAGAMLLKVPLMLTFLYLFVCSLDMLSSAFQ 126
Query: 96 LIVGKALGEDIGG----KRAVAGMVLTVIGISLCITSSVS 131
L GK G+ VAG+V+ ++ L +SS S
Sbjct: 127 LAGGKVAGDIFKDNAILSNPVAGLVVGILVTVLVQSSSTS 166
>gi|19743869 Fc alpha receptor isoform h [Homo sapiens]
Length = 253
Score = 27.7 bits (60), Expect = 3.2
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Query: 8 VLALVLVAAL------WGGTQPLLKRASAGLQRVHEPTWAQQLLQ 46
V LVLVA L W L K ASA V EP+W+QQ+ Q
Sbjct: 199 VAGLVLVALLAILVENWHSHTALNKEASAD---VAEPSWSQQMCQ 240
>gi|19743867 Fc alpha receptor isoform g [Homo sapiens]
Length = 178
Score = 27.7 bits (60), Expect = 3.2
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Query: 8 VLALVLVAAL------WGGTQPLLKRASAGLQRVHEPTWAQQLLQ 46
V LVLVA L W L K ASA V EP+W+QQ+ Q
Sbjct: 124 VAGLVLVALLAILVENWHSHTALNKEASAD---VAEPSWSQQMCQ 165
>gi|19743863 Fc alpha receptor isoform e [Homo sapiens]
Length = 179
Score = 27.7 bits (60), Expect = 3.2
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Query: 8 VLALVLVAAL------WGGTQPLLKRASAGLQRVHEPTWAQQLLQ 46
V LVLVA L W L K ASA V EP+W+QQ+ Q
Sbjct: 125 VAGLVLVALLAILVENWHSHTALNKEASAD---VAEPSWSQQMCQ 166
>gi|19743861 Fc alpha receptor isoform d [Homo sapiens]
Length = 275
Score = 27.7 bits (60), Expect = 3.2
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Query: 8 VLALVLVAAL------WGGTQPLLKRASAGLQRVHEPTWAQQLLQ 46
V LVLVA L W L K ASA V EP+W+QQ+ Q
Sbjct: 221 VAGLVLVALLAILVENWHSHTALNKEASAD---VAEPSWSQQMCQ 262
>gi|19743859 Fc alpha receptor isoform c precursor [Homo sapiens]
Length = 191
Score = 27.7 bits (60), Expect = 3.2
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Query: 8 VLALVLVAAL------WGGTQPLLKRASAGLQRVHEPTWAQQLLQ 46
V LVLVA L W L K ASA V EP+W+QQ+ Q
Sbjct: 137 VAGLVLVALLAILVENWHSHTALNKEASAD---VAEPSWSQQMCQ 178
>gi|19743857 Fc alpha receptor isoform b precursor [Homo sapiens]
Length = 265
Score = 27.7 bits (60), Expect = 3.2
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Query: 8 VLALVLVAAL------WGGTQPLLKRASAGLQRVHEPTWAQQLLQ 46
V LVLVA L W L K ASA V EP+W+QQ+ Q
Sbjct: 211 VAGLVLVALLAILVENWHSHTALNKEASAD---VAEPSWSQQMCQ 252
>gi|4503673 Fc alpha receptor isoform a precursor [Homo sapiens]
Length = 287
Score = 27.7 bits (60), Expect = 3.2
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Query: 8 VLALVLVAAL------WGGTQPLLKRASAGLQRVHEPTWAQQLLQ 46
V LVLVA L W L K ASA V EP+W+QQ+ Q
Sbjct: 233 VAGLVLVALLAILVENWHSHTALNKEASAD---VAEPSWSQQMCQ 274
>gi|166197666 putative homeodomain transcription factor 1 [Homo
sapiens]
Length = 762
Score = 26.6 bits (57), Expect = 7.1
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 43 QLLQEMKTLFLNTEYLMPFLLNQCGSLLYYLTLAS 77
Q+LQ KT FLN Y FL+ + LL+ L LAS
Sbjct: 630 QVLQGHKT-FLNDAYNWEFLIWETALLLFLLRLAS 663
>gi|171543850 RUN domain containing 1 [Homo sapiens]
Length = 613
Score = 26.6 bits (57), Expect = 7.1
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 21 TQPLLKRASAGLQRVHEPTWA-QQLLQEMKTLFLNTEYLMPFLLNQCGSLL 70
T+ L +R A + ++ P +QL++++KT + E + F+ ++ GS L
Sbjct: 242 TEELRQRVDAAVAQIVNPARVKEQLVEQLKTQIRDLEMFINFIQDEVGSPL 292
>gi|239787844 testis expressed 10 isoform 2 [Homo sapiens]
Length = 913
Score = 26.2 bits (56), Expect = 9.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 55 TEYLMPFLLNQCGSLLYYL 73
+E L+PFL + C SLLY+L
Sbjct: 793 SETLLPFLASCCYSLLYFL 811
>gi|239787838 testis expressed 10 isoform 1 [Homo sapiens]
Length = 929
Score = 26.2 bits (56), Expect = 9.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 55 TEYLMPFLLNQCGSLLYYL 73
+E L+PFL + C SLLY+L
Sbjct: 790 SETLLPFLASCCYSLLYFL 808
>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
Length = 1384
Score = 26.2 bits (56), Expect = 9.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 18 WGGTQPLLKRASAGLQR 34
WGG+QP ++R + GL R
Sbjct: 705 WGGSQPGIQRCACGLDR 721
>gi|157266307 aquaporin 9 [Homo sapiens]
Length = 295
Score = 26.2 bits (56), Expect = 9.3
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 72 YLTLASTDLTLAVPICNSLAIIFTLIVGKALGEDIGGKRAVAGMVLTVIGISLCITS 128
YL+LA+ V L I+F + + LG G + G+++ VI SL + S
Sbjct: 155 YLSLANAFADQVVATMILLIIVFAIFDSRNLGAPRGLEPIAIGLLIIVIASSLGLNS 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,252,705
Number of Sequences: 37866
Number of extensions: 148692
Number of successful extensions: 365
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 17
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.