Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C1orf91 Sequence: fasta or formatted (140aa) NCBI GI: 98162668
Description:

hypothetical protein LOC56063

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         14           2
 C cysteine            2.1          3           1
 D aspartate           1.4          2           1
 E glutamate           2.9          4           1
 F phenylalanine       2.1          3           1
 G glycine             8.6         12           2
 H histidine           0.7          1           1
 I isoleucine          5.7          8           2
 K lysine              3.6          5           1
 L leucine            19.3         27           2
 M methionine          2.9          4           1
 N asparagine          2.1          3           1
 P proline             2.9          4           1
 Q glutamine           7.1         10           2
 R arginine            2.1          3           1
 S serine              7.1         10           2
 T threonine           8.6         12           1
 V valine              7.1         10           1
 W tryptophan          1.4          2           1
 Y tyrosine            2.1          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC56063 
SLC47A2               0.028   solute carrier family 47, member 2 isoform 2 
SLC47A2               0.028   solute carrier family 47, member 2 isoform 1 
SLC34A1               0.016   solute carrier family 34 (sodium phosphate), member...
FCAR                  0.012   Fc alpha receptor isoform h 
FCAR                  0.012   Fc alpha receptor isoform g 
FCAR                  0.012   Fc alpha receptor isoform e 
FCAR                  0.012   Fc alpha receptor isoform d 
FCAR                  0.012   Fc alpha receptor isoform c precursor 
FCAR                  0.012   Fc alpha receptor isoform b precursor 
FCAR                  0.012   Fc alpha receptor isoform a precursor 
PHTF1                 0.008   putative homeodomain transcription factor 1 
RUNDC1                0.008   RUN domain containing 1 
TEX10                 0.004   testis expressed 10 isoform 2 
TEX10                 0.004   testis expressed 10 isoform 1 
CNTNAP1               0.004   contactin associated protein 1 precursor 
AQP9                  0.004   aquaporin 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press