Search of human proteins with 9506641

Search of human proteins with 9506641

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|9506641 hypothetical protein LOC54491 [Homo sapiens]
         (356 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|9506641 hypothetical protein LOC54491 [Homo sapiens]               735   0.0  
gi|115334675 hypothetical protein LOC90268 [Homo sapiens]             228   6e-60
gi|76443679 proprotein convertase subtilisin/kexin type 4 [Homo ...    31   1.9  
gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens]    30   2.5  
gi|29469071 Rho GTPase-activating protein isoform 2 [Homo sapiens]     30   2.5  
gi|211971072 FERM and PDZ domain containing 4 [Homo sapiens]           29   5.6  
gi|87116668 hypothetical protein LOC9870 [Homo sapiens]                29   5.6  

>gi|9506641 hypothetical protein LOC54491 [Homo sapiens]
          Length = 356

 Score =  735 bits (1897), Expect = 0.0
 Identities = 356/356 (100%), Positives = 356/356 (100%)

Query: 1   MAATRSPTRARERERSGAPAAGSDQVHSWMLATSQALDTVWRMAKGFVMLAVSFLVAAIC 60
           MAATRSPTRARERERSGAPAAGSDQVHSWMLATSQALDTVWRMAKGFVMLAVSFLVAAIC
Sbjct: 1   MAATRSPTRARERERSGAPAAGSDQVHSWMLATSQALDTVWRMAKGFVMLAVSFLVAAIC 60

Query: 61  YFRRLHLYSGHKLKWWIGYLQRKFKRNLSVEAEVDLLSYCAREWKGETPRNKLMRKAYEE 120
           YFRRLHLYSGHKLKWWIGYLQRKFKRNLSVEAEVDLLSYCAREWKGETPRNKLMRKAYEE
Sbjct: 61  YFRRLHLYSGHKLKWWIGYLQRKFKRNLSVEAEVDLLSYCAREWKGETPRNKLMRKAYEE 120

Query: 121 LFWRHHIKCVRQVRRDNYDALRSVLFQIFSQGISFPSWMKEKDIVKLPEKLLFSQGCNWI 180
           LFWRHHIKCVRQVRRDNYDALRSVLFQIFSQGISFPSWMKEKDIVKLPEKLLFSQGCNWI
Sbjct: 121 LFWRHHIKCVRQVRRDNYDALRSVLFQIFSQGISFPSWMKEKDIVKLPEKLLFSQGCNWI 180

Query: 181 QQYSFGPEKYTGSNVFGKLRKYVELLKTQWTEFNGIRDYHKRGSMCNTLFSDAILEYKLY 240
           QQYSFGPEKYTGSNVFGKLRKYVELLKTQWTEFNGIRDYHKRGSMCNTLFSDAILEYKLY
Sbjct: 181 QQYSFGPEKYTGSNVFGKLRKYVELLKTQWTEFNGIRDYHKRGSMCNTLFSDAILEYKLY 240

Query: 241 EALKFIMLYQVTEVYEQMKTKKVIPSLFRLLFSRETSSDPLSFMMNHLNSVGDTCGLEQI 300
           EALKFIMLYQVTEVYEQMKTKKVIPSLFRLLFSRETSSDPLSFMMNHLNSVGDTCGLEQI
Sbjct: 241 EALKFIMLYQVTEVYEQMKTKKVIPSLFRLLFSRETSSDPLSFMMNHLNSVGDTCGLEQI 300

Query: 301 DMFILGYSLEVKIKVFRLFKFNSRDFEVCYPEEPLRDWPEISLLTENDRHYHIPVF 356
           DMFILGYSLEVKIKVFRLFKFNSRDFEVCYPEEPLRDWPEISLLTENDRHYHIPVF
Sbjct: 301 DMFILGYSLEVKIKVFRLFKFNSRDFEVCYPEEPLRDWPEISLLTENDRHYHIPVF 356


>gi|115334675 hypothetical protein LOC90268 [Homo sapiens]
          Length = 352

 Score =  228 bits (581), Expect = 6e-60
 Identities = 112/270 (41%), Positives = 173/270 (64%), Gaps = 7/270 (2%)

Query: 88  LSVEAEVDLLSYCAREWKGETPRNKLMRKAYEELFWRHHIKCVRQVRRDNYDALRSVLFQ 147
           LSV  E+D++ YC +EW+G T +   M+  YEE+  +     +R+VR DNY ALR+ LFQ
Sbjct: 80  LSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQK--FTSIRRVRGDNYCALRATLFQ 137

Query: 148 IFSQGISFPSWMKEKDIVKLPEKLLFSQGCNWIQQYSFGPEKYTGSN--VFGKLRKYVEL 205
             SQ +  P W+++ +++ LPEKL+     NWI+Q+  G  K+ G N  +  K+++ + L
Sbjct: 138 AMSQAVGLPPWLQDPELMLLPEKLISKY--NWIKQWKLGL-KFDGKNEDLVDKIKESLTL 194

Query: 206 LKTQWTEFNGIRDYHKRGSMCNTLFSDAILEYKLYEALKFIMLYQVTEVYEQMKTKKVIP 265
           L+ +W     +R    R   C+ LF++   EY LYEA+KF+ML +  E+Y   +  K +P
Sbjct: 195 LRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVP 254

Query: 266 SLFRLLFSRETSSDPLSFMMNHLNSVGDTCGLEQIDMFILGYSLEVKIKVFRLFKFNSRD 325
               LLF+R+TS+DP   + NHLN VG T GLEQ++MF+L Y++   I+V+RL K+N+ +
Sbjct: 255 FFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEE 314

Query: 326 FEVCYPEEPLRDWPEISLLTENDRHYHIPV 355
           F   YP +P +DWP ++L+ E+DRHY+IPV
Sbjct: 315 FITVYPTDPPKDWPVVTLIAEDDRHYNIPV 344


>gi|76443679 proprotein convertase subtilisin/kexin type 4 [Homo
           sapiens]
          Length = 755

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 18/101 (17%)

Query: 11  RERERSGAPAAGSDQVHSWMLATSQALDTVWRMAK--GFVMLAVSFLVAAICYFR----- 63
           R R    AP      V SW +  SQ    V R+A+  GFV L   F      + R     
Sbjct: 20  RPRAVGWAPVRAPIYVSSWAVQVSQGNREVERLARKFGFVNLGPIFPDGQYFHLRHRGVV 79

Query: 64  ----------RLHLYSGHKLKWWIGY-LQRKFKRNLSVEAE 93
                     RLHL    K++W+    LQR+ KR++ V  +
Sbjct: 80  QQSLTPHWGHRLHLKKNPKVQWFQQQTLQRRVKRSVVVPTD 120


>gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens]
          Length = 2087

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 216 IRDYHKRGSMCNTLFSDA---ILEYKLYEALKFIMLYQVTEVYEQMKTKKVIPSLFRLLF 272
           ++D H  GS+C   F +    +L Y+LYE     +    T+    +K   VI  L     
Sbjct: 436 VQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVS-AATDEERLIKIHDVIQQL----- 489

Query: 273 SRETSSDPLSFMMNHLNSVGDTCGL 297
                   L F+M HL+ + D C +
Sbjct: 490 -PPPHYRTLEFLMRHLSLLADYCSI 513


>gi|29469071 Rho GTPase-activating protein isoform 2 [Homo sapiens]
          Length = 1738

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 216 IRDYHKRGSMCNTLFSDA---ILEYKLYEALKFIMLYQVTEVYEQMKTKKVIPSLFRLLF 272
           ++D H  GS+C   F +    +L Y+LYE     +    T+    +K   VI  L     
Sbjct: 87  VQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVS-AATDEERLIKIHDVIQQL----- 140

Query: 273 SRETSSDPLSFMMNHLNSVGDTCGL 297
                   L F+M HL+ + D C +
Sbjct: 141 -PPPHYRTLEFLMRHLSLLADYCSI 164


>gi|211971072 FERM and PDZ domain containing 4 [Homo sapiens]
          Length = 1322

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 172 LFSQGCNWIQQYSFGPE-KYTGSNVFGKLRKYVELLKTQWTEFNGIRDYHKRGSMCNTLF 230
           L+ Q CN + Q  FGPE KY  +     L+ Y+  + T+ T+   ++   K   +  T  
Sbjct: 308 LYVQSCNDVVQERFGPELKYDIALRLAALQMYIATVTTKQTQKISLKYIEKEWGL-ETFL 366

Query: 231 SDAILE 236
             A+L+
Sbjct: 367 PSAVLQ 372


>gi|87116668 hypothetical protein LOC9870 [Homo sapiens]
          Length = 823

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 264 IPSLFRLLFSRETSSDPLSFMMNHLNSVGDTCGLEQIDMFILGYSL-EVKIKVFRLFKFN 322
           I SL + +   ET  D ++F    L  V       ++ + +  ++L E  +K  R F  +
Sbjct: 426 IRSLHKNIGGSETFQDKVNFFQRELRQVHMKRPHSKVTLKVSRHALLESSLKATRNFSIS 485

Query: 323 --SRDFEVCYPEEPLRDW 338
             S++FEV + +E   DW
Sbjct: 486 DWSKNFEVVFQDEEALDW 503


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,106,988
Number of Sequences: 37866
Number of extensions: 540878
Number of successful extensions: 1524
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1518
Number of HSP's gapped (non-prelim): 7
length of query: 356
length of database: 18,247,518
effective HSP length: 103
effective length of query: 253
effective length of database: 14,347,320
effective search space: 3629871960
effective search space used: 3629871960
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.