Guide to the Human Genome
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Name: SGCZ Sequence: fasta or formatted (312aa) NCBI GI: 94721265
Description:

sarcoglycan zeta

Referenced in:

Gene Structure
Muscle

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         19           3
 C cysteine            2.2          7           1
 D aspartate           3.5         11           1
 E glutamate           7.4         23           2
 F phenylalanine       3.2         10           2
 G glycine             7.1         22           1
 H histidine           1.6          5           1
 I isoleucine          5.4         17           1
 K lysine              4.5         14           2
 L leucine            11.2         35           4
 M methionine          2.6          8           1
 N asparagine          4.5         14           2
 P proline             3.8         12           1
 Q glutamine           4.2         13           2
 R arginine            6.1         19           1
 S serine              9.3         29           5
 T threonine           7.1         22           1
 V valine              7.1         22           1
 W tryptophan          1.0          3           1
 Y tyrosine            2.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sarcoglycan zeta 
SGCD                  0.530   delta-sarcoglycan isoform 3 
SGCD                  0.530   delta-sarcoglycan isoform 1 
SGCG                  0.530   gamma sarcoglycan 
SGCD                  0.433   delta-sarcoglycan isoform 2 
SGCB                  0.049   sarcoglycan, beta 
RIPK1                 0.012   receptor (TNFRSF)-interacting serine-threonine kinas...
CLIP1                 0.007   restin isoform a 
DACH1                 0.005   dachshund homolog 1 isoform b 
DACH1                 0.005   dachshund homolog 1 isoform a 
DACH1                 0.005   dachshund homolog 1 isoform c 
WNK1                  0.005   WNK lysine deficient protein kinase 1 
MAST2                 0.005   microtubule associated serine/threonine kinase 2 [H...
ADAMTSL3              0.005   ADAMTS-like 3 precursor 
LRRC27                0.005   leucine rich repeat containing 27 isoform a 
LRRC27                0.005   leucine rich repeat containing 27 isoform a 
KIF24                 0.005   kinesin family member 24 
MAST4                 0.005   microtubule associated serine/threonine kinase fami...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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