Search of human proteins with 89903025

Search of human proteins with 89903025

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|89903025 hypothetical protein LOC113177 isoform 1 [Homo
sapiens]
         (214 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|89903025 hypothetical protein LOC113177 isoform 1 [Homo sapiens]   457   e-129
gi|89903023 hypothetical protein LOC113177 isoform 3 [Homo sapiens]   444   e-125
gi|194097475 izumo sperm-egg fusion 1 [Homo sapiens]                   30   1.2  
gi|157419154 selectin P precursor [Homo sapiens]                       29   2.6  
gi|187936949 solute carrier family 39 (zinc transporter), member...    29   3.4  
gi|55741750 solute carrier family 39 (zinc transporter), member ...    29   3.4  
gi|38678534 zinc finger protein 684 [Homo sapiens]                     28   7.6  
gi|19923354 zinc finger protein 238 isoform 2 [Homo sapiens]           27   10.0 
gi|45439302 zinc finger protein 238 isoform 1 [Homo sapiens]           27   10.0 

>gi|89903025 hypothetical protein LOC113177 isoform 1 [Homo sapiens]
          Length = 214

 Score =  457 bits (1176), Expect = e-129
 Identities = 214/214 (100%), Positives = 214/214 (100%)

Query: 1   MALLLCLVCLTAALAHGCLHCHSNFSKKFSFYRHHVNFKSWWVGDIPVSGALLTDWSDDT 60
           MALLLCLVCLTAALAHGCLHCHSNFSKKFSFYRHHVNFKSWWVGDIPVSGALLTDWSDDT
Sbjct: 1   MALLLCLVCLTAALAHGCLHCHSNFSKKFSFYRHHVNFKSWWVGDIPVSGALLTDWSDDT 60

Query: 61  MKELHLAIPAKITREKLDQVATAVYQMMDQLYQGKMYFPGYFPNELRNIFREQVHLIQNA 120
           MKELHLAIPAKITREKLDQVATAVYQMMDQLYQGKMYFPGYFPNELRNIFREQVHLIQNA
Sbjct: 61  MKELHLAIPAKITREKLDQVATAVYQMMDQLYQGKMYFPGYFPNELRNIFREQVHLIQNA 120

Query: 121 IIESRIDCQHRCGIFQYETISCNNCTDSHVACFGYNCESSAQWKSAVQGLLNYINNWHKQ 180
           IIESRIDCQHRCGIFQYETISCNNCTDSHVACFGYNCESSAQWKSAVQGLLNYINNWHKQ
Sbjct: 121 IIESRIDCQHRCGIFQYETISCNNCTDSHVACFGYNCESSAQWKSAVQGLLNYINNWHKQ 180

Query: 181 DTSMSLVSPALRCLEPPHLANLTLEDAAECLKQH 214
           DTSMSLVSPALRCLEPPHLANLTLEDAAECLKQH
Sbjct: 181 DTSMSLVSPALRCLEPPHLANLTLEDAAECLKQH 214


>gi|89903023 hypothetical protein LOC113177 isoform 3 [Homo sapiens]
          Length = 232

 Score =  444 bits (1142), Expect = e-125
 Identities = 213/232 (91%), Positives = 213/232 (91%), Gaps = 18/232 (7%)

Query: 1   MALLLCLVCLTAALAHGCLHCHSNFSKKFSFYRHHVNFKSWWVGDIPVSGALLTDWSDDT 60
           MALLLCLVCLTAALAHGCLHCHSNFSKKFSFYRHHVNFKSWWVGDIPVSGALLTDWSDDT
Sbjct: 1   MALLLCLVCLTAALAHGCLHCHSNFSKKFSFYRHHVNFKSWWVGDIPVSGALLTDWSDDT 60

Query: 61  MKELHLAIPAKITREKLDQVATAVYQMMDQLYQGKMYFPGYFPNELRNIFREQVHLIQNA 120
           MKELHLAIPAKITREKLDQVATAVYQMMDQLYQGKMYFPGYFPNELRNIFREQVHLIQNA
Sbjct: 61  MKELHLAIPAKITREKLDQVATAVYQMMDQLYQGKMYFPGYFPNELRNIFREQVHLIQNA 120

Query: 121 IIESRIDCQHRCGIFQYETISCNNCTDSHVACFGYNCESSAQWKSAVQGLLNYINNWHKQ 180
           IIESRIDCQHRCGIFQYETISCNNCTDSHVACFGYNCESSAQWKSAVQGLLNYINNWHKQ
Sbjct: 121 IIESRIDCQHRCGIFQYETISCNNCTDSHVACFGYNCESSAQWKSAVQGLLNYINNWHKQ 180

Query: 181 DTSMS------------------LVSPALRCLEPPHLANLTLEDAAECLKQH 214
           DTSM                   LVSPALRCLEPPHLANLTLEDAAECLKQH
Sbjct: 181 DTSMRPRSSAFSWPGTHRATPAFLVSPALRCLEPPHLANLTLEDAAECLKQH 232


>gi|194097475 izumo sperm-egg fusion 1 [Homo sapiens]
          Length = 350

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 128 CQHRCGIFQYETISCNNCTDSHVAC-FGYNC-ESSAQWKSAVQGLLNYINNWHKQDTSMS 185
           C ++CG+     I C NC     AC   Y+C E + +       +L+   NWH+    ++
Sbjct: 135 CPNKCGVMLQTLIWCKNCKKEVHACRKSYDCGERNVEVPQMEDMILDCELNWHQASEGLT 194


>gi|157419154 selectin P precursor [Homo sapiens]
          Length = 830

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 123 ESRIDCQHRCGIFQYETISCNNCTDS--HVACFGYNCESSAQWKS 165
           E+R++C H  G F+Y+++    C +    V      C ++  W S
Sbjct: 456 EARVNCSHPFGAFRYQSVCSFTCNEGLLLVGASVLQCLATGNWNS 500


>gi|187936949 solute carrier family 39 (zinc transporter), member
          10 [Homo sapiens]
          Length = 831

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 6  CLVCLTAALAHGCLHCH 22
          CL+CL   + H C HCH
Sbjct: 10 CLICLLTFIFHHCNHCH 26


>gi|55741750 solute carrier family 39 (zinc transporter), member
          10 [Homo sapiens]
          Length = 831

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 6  CLVCLTAALAHGCLHCH 22
          CL+CL   + H C HCH
Sbjct: 10 CLICLLTFIFHHCNHCH 26


>gi|38678534 zinc finger protein 684 [Homo sapiens]
          Length = 378

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)

Query: 11  TAALAHGCLHCHSNFSKKFSFYRHHVN 37
           T   A+ C  C   F KKF F RH  N
Sbjct: 154 TVENAYECSECGKAFKKKFHFIRHEKN 180


>gi|19923354 zinc finger protein 238 isoform 2 [Homo sapiens]
          Length = 522

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 16  HGCLHCHSNFSKKFSFYRHHVNFKSWWVGDIPVSGALLT-----DWS-DDTMKEL 64
           H C  C   F++    YRH   F    V  + V    L+     DW+ +D+ +EL
Sbjct: 466 HACKWCERRFTQSGDLYRHIRKFHCELVNSLSVKSEALSLPTVRDWTLEDSSQEL 520


>gi|45439302 zinc finger protein 238 isoform 1 [Homo sapiens]
          Length = 531

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 16  HGCLHCHSNFSKKFSFYRHHVNFKSWWVGDIPVSGALLT-----DWS-DDTMKEL 64
           H C  C   F++    YRH   F    V  + V    L+     DW+ +D+ +EL
Sbjct: 475 HACKWCERRFTQSGDLYRHIRKFHCELVNSLSVKSEALSLPTVRDWTLEDSSQEL 529


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.135    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,611,557
Number of Sequences: 37866
Number of extensions: 353541
Number of successful extensions: 1315
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1306
Number of HSP's gapped (non-prelim): 11
length of query: 214
length of database: 18,247,518
effective HSP length: 98
effective length of query: 116
effective length of database: 14,536,650
effective search space: 1686251400
effective search space used: 1686251400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.