Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 14141195
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14141195 stromal cell-derived factor 2 precursor [Homo
sapiens]
(211 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14141195 stromal cell-derived factor 2 precursor [Homo sapiens] 439 e-124
gi|56243533 stromal cell-derived factor 2-like 1 precursor [Homo... 276 9e-75
gi|32455271 protein-O-mannosyltransferase 2 [Homo sapiens] 57 9e-09
gi|209870084 protein-O-mannosyltransferase 1 isoform d [Homo sap... 47 2e-05
gi|209870082 protein-O-mannosyltransferase 1 isoform b [Homo sap... 47 2e-05
gi|116517315 protein-O-mannosyltransferase 1 isoform c [Homo sap... 47 2e-05
gi|116517317 protein-O-mannosyltransferase 1 isoform b [Homo sap... 47 2e-05
gi|116517319 protein-O-mannosyltransferase 1 isoform a [Homo sap... 47 2e-05
gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens] 34 0.079
gi|148886654 polydom [Homo sapiens] 32 0.39
gi|222136611 poliovirus receptor-related 4 [Homo sapiens] 32 0.51
gi|239752881 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|239747434 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|239741258 PREDICTED: hypothetical protein XP_002342146 [Homo ... 30 2.0
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 29 3.3
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 29 3.3
gi|42519916 forkhead box O3A [Homo sapiens] 28 4.4
gi|4503739 forkhead box O3A [Homo sapiens] 28 4.4
gi|30387642 late cornified envelope 4A [Homo sapiens] 28 7.4
>gi|14141195 stromal cell-derived factor 2 precursor [Homo sapiens]
Length = 211
Score = 439 bits (1129), Expect = e-124
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MAVVPLLLLGGLWSAVGASSLGVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGV 60
MAVVPLLLLGGLWSAVGASSLGVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGV
Sbjct: 1 MAVVPLLLLGGLWSAVGASSLGVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGV 60
Query: 61 TSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 120
TSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA
Sbjct: 61 TSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSA 120
Query: 121 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 180
FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA
Sbjct: 121 FGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMA 180
Query: 181 QPSQNNYWKAMEGIFMKPSELLKAEAHHAEL 211
QPSQNNYWKAMEGIFMKPSELLKAEAHHAEL
Sbjct: 181 QPSQNNYWKAMEGIFMKPSELLKAEAHHAEL 211
>gi|56243533 stromal cell-derived factor 2-like 1 precursor [Homo
sapiens]
Length = 221
Score = 276 bits (706), Expect = 9e-75
Identities = 136/207 (65%), Positives = 159/207 (76%), Gaps = 4/207 (1%)
Query: 7 LLLGGLWSAVGASSLG--VVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVD 64
LLL L GA+ G +VTCGSV+KLLNT H VRLHSHD++YGSGSGQQSVTGV + D
Sbjct: 17 LLLALLVPGGGAAKTGAELVTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASD 76
Query: 65 DSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEE 124
D+NSYWRIRG S C RG+P++CGQ +RLTHV TG+NLH+HHF SPLS NQEVSAFGE+
Sbjct: 77 DANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGED 136
Query: 125 GEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQ 184
GEGD LD WTV C+G +W R+ VRF+H T V LSVTGEQYG PI GQ EVHGM +
Sbjct: 137 GEGDDLDLWTVRCSGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMPSANT 196
Query: 185 NNYWKAMEGIFMKPSELLKAEAHHAEL 211
+N WKAMEGIF+KPS ++ A H EL
Sbjct: 197 HNTWKAMEGIFIKPS--VEPSAGHDEL 221
>gi|32455271 protein-O-mannosyltransferase 2 [Homo sapiens]
Length = 750
Score = 57.4 bits (137), Expect = 9e-09
Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 17/153 (11%)
Query: 27 GSVVKLLNTRHNVR-LHSHDVRY--GSGSGQQSVTGVTSVDDSNSYWRIRGKSATVCERG 83
GSV+ + N R + LHSH Y G G+ QQ VT D N+ W I+ K T +
Sbjct: 340 GSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVTTYLH-KDYNNLWIIK-KHNTNSDPL 397
Query: 84 TP------IKCGQPIRLTHVNTGRNLHSHHFTSPLS-GNQEVSAFGEEGEGDYLDDWTV- 135
P ++ G IRL H T RNLHSH+ +P++ + +V+ +G G GD D W +
Sbjct: 398 DPSFPVEFVRHGDIIRLEHKETSRNLHSHYHEAPMTRKHYQVTGYGINGTGDSNDFWRIE 457
Query: 136 LCNGPYW----VRDGEVRFKHSSTEVLLSVTGE 164
+ N + V +RF H T +L +G+
Sbjct: 458 VVNRKFGNRIKVLRSRIRFIHLVTGCVLGSSGK 490
>gi|209870084 protein-O-mannosyltransferase 1 isoform d [Homo
sapiens]
Length = 608
Score = 46.6 bits (109), Expect = 2e-05
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 33/148 (22%)
Query: 41 LHSHDVRY------GSGSGQQSVTGVTSVDDSNSYWRI---RGKSATVCERGTPIKCGQP 91
LHSH Y G GS Q D N++W + R V P++ G
Sbjct: 202 LHSHQDTYPMIYENGRGSSHQQQVTCYPFKDVNNWWIVKDPRRHQLVVSSPPRPVRHGDM 261
Query: 92 IRLTHVNTGRNLHSHHFTSPLS-GNQEVSAFGE---------------EGEGDYLDDWTV 135
++L H T R+L++H +PLS +QEVS + + G D W
Sbjct: 262 VQLVHGMTTRSLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWRLEIVNRGSDTDVWKT 321
Query: 136 LCNGPYWVRDGEVRFKHSSTEVLLSVTG 163
+ + EVRF H +T +L ++G
Sbjct: 322 ILS--------EVRFVHVNTSAVLKLSG 341
>gi|209870082 protein-O-mannosyltransferase 1 isoform b [Homo
sapiens]
Length = 725
Score = 46.6 bits (109), Expect = 2e-05
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 33/148 (22%)
Query: 41 LHSHDVRY------GSGSGQQSVTGVTSVDDSNSYWRI---RGKSATVCERGTPIKCGQP 91
LHSH Y G GS Q D N++W + R V P++ G
Sbjct: 319 LHSHQDTYPMIYENGRGSSHQQQVTCYPFKDVNNWWIVKDPRRHQLVVSSPPRPVRHGDM 378
Query: 92 IRLTHVNTGRNLHSHHFTSPLS-GNQEVSAFGE---------------EGEGDYLDDWTV 135
++L H T R+L++H +PLS +QEVS + + G D W
Sbjct: 379 VQLVHGMTTRSLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWRLEIVNRGSDTDVWKT 438
Query: 136 LCNGPYWVRDGEVRFKHSSTEVLLSVTG 163
+ + EVRF H +T +L ++G
Sbjct: 439 ILS--------EVRFVHVNTSAVLKLSG 458
>gi|116517315 protein-O-mannosyltransferase 1 isoform c [Homo
sapiens]
Length = 671
Score = 46.6 bits (109), Expect = 2e-05
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 33/148 (22%)
Query: 41 LHSHDVRY------GSGSGQQSVTGVTSVDDSNSYWRI---RGKSATVCERGTPIKCGQP 91
LHSH Y G GS Q D N++W + R V P++ G
Sbjct: 265 LHSHQDTYPMIYENGRGSSHQQQVTCYPFKDVNNWWIVKDPRRHQLVVSSPPRPVRHGDM 324
Query: 92 IRLTHVNTGRNLHSHHFTSPLS-GNQEVSAFGE---------------EGEGDYLDDWTV 135
++L H T R+L++H +PLS +QEVS + + G D W
Sbjct: 325 VQLVHGMTTRSLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWRLEIVNRGSDTDVWKT 384
Query: 136 LCNGPYWVRDGEVRFKHSSTEVLLSVTG 163
+ + EVRF H +T +L ++G
Sbjct: 385 ILS--------EVRFVHVNTSAVLKLSG 404
>gi|116517317 protein-O-mannosyltransferase 1 isoform b [Homo
sapiens]
Length = 725
Score = 46.6 bits (109), Expect = 2e-05
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 33/148 (22%)
Query: 41 LHSHDVRY------GSGSGQQSVTGVTSVDDSNSYWRI---RGKSATVCERGTPIKCGQP 91
LHSH Y G GS Q D N++W + R V P++ G
Sbjct: 319 LHSHQDTYPMIYENGRGSSHQQQVTCYPFKDVNNWWIVKDPRRHQLVVSSPPRPVRHGDM 378
Query: 92 IRLTHVNTGRNLHSHHFTSPLS-GNQEVSAFGE---------------EGEGDYLDDWTV 135
++L H T R+L++H +PLS +QEVS + + G D W
Sbjct: 379 VQLVHGMTTRSLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWRLEIVNRGSDTDVWKT 438
Query: 136 LCNGPYWVRDGEVRFKHSSTEVLLSVTG 163
+ + EVRF H +T +L ++G
Sbjct: 439 ILS--------EVRFVHVNTSAVLKLSG 458
>gi|116517319 protein-O-mannosyltransferase 1 isoform a [Homo
sapiens]
Length = 747
Score = 46.6 bits (109), Expect = 2e-05
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 33/148 (22%)
Query: 41 LHSHDVRY------GSGSGQQSVTGVTSVDDSNSYWRI---RGKSATVCERGTPIKCGQP 91
LHSH Y G GS Q D N++W + R V P++ G
Sbjct: 341 LHSHQDTYPMIYENGRGSSHQQQVTCYPFKDVNNWWIVKDPRRHQLVVSSPPRPVRHGDM 400
Query: 92 IRLTHVNTGRNLHSHHFTSPLS-GNQEVSAFGE---------------EGEGDYLDDWTV 135
++L H T R+L++H +PLS +QEVS + + G D W
Sbjct: 401 VQLVHGMTTRSLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWRLEIVNRGSDTDVWKT 460
Query: 136 LCNGPYWVRDGEVRFKHSSTEVLLSVTG 163
+ + EVRF H +T +L ++G
Sbjct: 461 ILS--------EVRFVHVNTSAVLKLSG 480
>gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]
Length = 4967
Score = 34.3 bits (77), Expect = 0.079
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 12 LWSAVGASS-----LGVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVT-----GVT 61
LWS SS G + G V++LL+ + L V G +Q T G
Sbjct: 211 LWSVAPISSGSEAAQGYLIGGDVLRLLHGHMDECL---TVPSGEHGEEQRRTVHYEGGAV 267
Query: 62 SVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNL 103
SV + S WR+ ++ V G+ I+ GQP RL HV TG+ L
Sbjct: 268 SVH-ARSLWRL--ETLRVAWSGSHIRWGQPFRLRHVTTGKYL 306
>gi|148886654 polydom [Homo sapiens]
Length = 3571
Score = 32.0 bits (71), Expect = 0.39
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 24 VTCGSVVKLLN--TRHNV-RLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKSATVC 80
V+CG K+ N H R+ +VRY G +SV V +N +W +S +C
Sbjct: 2202 VSCGEPPKVENGFLEHTTGRIFESEVRYQCNPGYKSVGSPVFVCQANRHW--HSESPLMC 2259
Query: 81 ERGTPIKCGQP 91
P+ CG+P
Sbjct: 2260 ---VPLDCGKP 2267
>gi|222136611 poliovirus receptor-related 4 [Homo sapiens]
Length = 510
Score = 31.6 bits (70), Expect = 0.51
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 87 KCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDD 132
K + + LT N+ R LHSHH T P S +E EG D L D
Sbjct: 385 KYEEELTLTRENSIRRLHSHH-TDPRSQPEESVGLRAEGHPDSLKD 429
>gi|239752881 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 29.6 bits (65), Expect = 2.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 36 RHNVRLHSHDVRYGSGSGQQSVT--GVTSVDDSNSYWRIRGKSATVCERGTPIKCGQP 91
RH+VR H D R G G VT + S+ D++ R+ R P+ C QP
Sbjct: 90 RHSVRTHGGDERAVEGPGDSKVTVGNILSLQDASELHRL-------AHRVQPLLCLQP 140
>gi|239747434 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 29.6 bits (65), Expect = 2.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 36 RHNVRLHSHDVRYGSGSGQQSVT--GVTSVDDSNSYWRIRGKSATVCERGTPIKCGQP 91
RH+VR H D R G G VT + S+ D++ R+ R P+ C QP
Sbjct: 90 RHSVRTHGGDERAVEGPGDSKVTVGNILSLQDASELHRL-------AHRVQPLLCLQP 140
>gi|239741258 PREDICTED: hypothetical protein XP_002342146 [Homo
sapiens]
Length = 254
Score = 29.6 bits (65), Expect = 2.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 36 RHNVRLHSHDVRYGSGSGQQSVT--GVTSVDDSNSYWRIRGKSATVCERGTPIKCGQP 91
RH+VR H D R G G VT + S+ D++ R+ R P+ C QP
Sbjct: 90 RHSVRTHGGDERAVEGPGDSKVTVGNILSLQDASELHRL-------AHRVQPLLCLQP 140
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 28.9 bits (63), Expect = 3.3
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 66 SNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNL 103
+ S WR+ + + G+ ++ GQP+R+ HV TG+ L
Sbjct: 255 ARSLWRL--EPLRISWSGSHLRWGQPLRVRHVTTGQYL 290
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 28.9 bits (63), Expect = 3.3
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 66 SNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNL 103
+ S WR+ + + G+ ++ GQP+R+ HV TG+ L
Sbjct: 255 ARSLWRL--EPLRISWSGSHLRWGQPLRVRHVTTGQYL 290
>gi|42519916 forkhead box O3A [Homo sapiens]
Length = 673
Score = 28.5 bits (62), Expect = 4.4
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 16/58 (27%)
Query: 36 RHNVRLHSHDVRY----------------GSGSGQQSVTGVTSVDDSNSYWRIRGKSA 77
RHN+ LHS +R G SG+ S+D+SN Y + RG++A
Sbjct: 211 RHNLSLHSRFMRVQNEGTGKSSWWIINPDGGKSGKAPRRRAVSMDNSNKYTKSRGRAA 268
>gi|4503739 forkhead box O3A [Homo sapiens]
Length = 673
Score = 28.5 bits (62), Expect = 4.4
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 16/58 (27%)
Query: 36 RHNVRLHSHDVRY----------------GSGSGQQSVTGVTSVDDSNSYWRIRGKSA 77
RHN+ LHS +R G SG+ S+D+SN Y + RG++A
Sbjct: 211 RHNLSLHSRFMRVQNEGTGKSSWWIINPDGGKSGKAPRRRAVSMDNSNKYTKSRGRAA 268
>gi|30387642 late cornified envelope 4A [Homo sapiens]
Length = 99
Score = 27.7 bits (60), Expect = 7.4
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 14 SAVGASSLGVVTC---GSVVKLLNTRHNVRLHSHDVR----YGSGSGQQS 56
S G+SS G C G L + RH+ R H H + YGSGSGQQS
Sbjct: 39 SCCGSSSGGCGCCSSEGGGCCLSHHRHH-RSHCHRPKSSNCYGSGSGQQS 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,683,696
Number of Sequences: 37866
Number of extensions: 395154
Number of successful extensions: 851
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 21
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.