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Search of human proteins with 8922281
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8922281 WDYHV motif containing 1 [Homo sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8922281 WDYHV motif containing 1 [Homo sapiens] 449 e-127
gi|5453611 CD28 antigen precursor [Homo sapiens] 31 0.64
gi|154091312 transient receptor potential cation channel, subfam... 29 3.2
gi|154091308 transient receptor potential cation channel, subfam... 29 3.2
gi|154091310 transient receptor potential cation channel, subfam... 29 3.2
gi|154091320 transient receptor potential cation channel, subfam... 29 3.2
gi|154091318 transient receptor potential cation channel, subfam... 29 3.2
gi|154091316 transient receptor potential cation channel, subfam... 29 3.2
gi|154091314 transient receptor potential cation channel, subfam... 29 3.2
gi|89191868 von Willebrand factor preproprotein [Homo sapiens] 28 4.2
gi|68348709 formin binding protein 1-like isoform 1 [Homo sapiens] 28 5.5
gi|41581463 formin binding protein 1-like isoform 2 [Homo sapiens] 28 5.5
gi|4504023 glycine receptor, beta [Homo sapiens] 28 5.5
gi|119395716 forkhead box C1 [Homo sapiens] 27 9.3
>gi|8922281 WDYHV motif containing 1 [Homo sapiens]
Length = 205
Score = 449 bits (1156), Expect = e-127
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MEGNGPAAVHYQPASPPRDACVYSSCYCEENIWKLCEYIKNHDQYPLEECYAVFISNERK 60
MEGNGPAAVHYQPASPPRDACVYSSCYCEENIWKLCEYIKNHDQYPLEECYAVFISNERK
Sbjct: 1 MEGNGPAAVHYQPASPPRDACVYSSCYCEENIWKLCEYIKNHDQYPLEECYAVFISNERK 60
Query: 61 MIPIWKQQARPGDGPVIWDYHVVLLHVSSGGQNFIYDLDTVLPFPCLFDTYVEDAFKSDD 120
MIPIWKQQARPGDGPVIWDYHVVLLHVSSGGQNFIYDLDTVLPFPCLFDTYVEDAFKSDD
Sbjct: 61 MIPIWKQQARPGDGPVIWDYHVVLLHVSSGGQNFIYDLDTVLPFPCLFDTYVEDAFKSDD 120
Query: 121 DIHPQFRRKFRVIRADSYLKNFASDRSHMKDSSGNWREPPPPYPCIETGDSKMNLNDFIS 180
DIHPQFRRKFRVIRADSYLKNFASDRSHMKDSSGNWREPPPPYPCIETGDSKMNLNDFIS
Sbjct: 121 DIHPQFRRKFRVIRADSYLKNFASDRSHMKDSSGNWREPPPPYPCIETGDSKMNLNDFIS 180
Query: 181 MDPKVGWGAVYTLSEFTHRFGSKNC 205
MDPKVGWGAVYTLSEFTHRFGSKNC
Sbjct: 181 MDPKVGWGAVYTLSEFTHRFGSKNC 205
>gi|5453611 CD28 antigen precursor [Homo sapiens]
Length = 220
Score = 31.2 bits (69), Expect = 0.64
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 5 GPAAVHYQPASPPRDACVYSS 25
GP HYQP +PPRD Y S
Sbjct: 200 GPTRKHYQPYAPPRDFAAYRS 220
>gi|154091312 transient receptor potential cation channel, subfamily
M, member 3 isoform b [Homo sapiens]
Length = 1566
Score = 28.9 bits (63), Expect = 3.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 140 KNFASDRSHMKDSSGNWREPPPPYPCIETGDSKMNL 175
++F+SD +H+ + W PP Y IE S L
Sbjct: 1329 RSFSSDYTHLPECQNPWDSEPPMYHTIERSKSSRYL 1364
>gi|154091308 transient receptor potential cation channel, subfamily
M, member 3 isoform f [Homo sapiens]
Length = 1579
Score = 28.9 bits (63), Expect = 3.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 140 KNFASDRSHMKDSSGNWREPPPPYPCIETGDSKMNL 175
++F+SD +H+ + W PP Y IE S L
Sbjct: 1342 RSFSSDYTHLPECQNPWDSEPPMYHTIERSKSSRYL 1377
>gi|154091310 transient receptor potential cation channel, subfamily
M, member 3 isoform g [Homo sapiens]
Length = 1569
Score = 28.9 bits (63), Expect = 3.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 140 KNFASDRSHMKDSSGNWREPPPPYPCIETGDSKMNL 175
++F+SD +H+ + W PP Y IE S L
Sbjct: 1332 RSFSSDYTHLPECQNPWDSEPPMYHTIERSKSSRYL 1367
>gi|154091320 transient receptor potential cation channel, subfamily
M, member 3 isoform a [Homo sapiens]
Length = 1554
Score = 28.9 bits (63), Expect = 3.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 140 KNFASDRSHMKDSSGNWREPPPPYPCIETGDSKMNL 175
++F+SD +H+ + W PP Y IE S L
Sbjct: 1317 RSFSSDYTHLPECQNPWDSEPPMYHTIERSKSSRYL 1352
>gi|154091318 transient receptor potential cation channel, subfamily
M, member 3 isoform d [Homo sapiens]
Length = 1544
Score = 28.9 bits (63), Expect = 3.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 140 KNFASDRSHMKDSSGNWREPPPPYPCIETGDSKMNL 175
++F+SD +H+ + W PP Y IE S L
Sbjct: 1307 RSFSSDYTHLPECQNPWDSEPPMYHTIERSKSSRYL 1342
>gi|154091316 transient receptor potential cation channel, subfamily
M, member 3 isoform e [Homo sapiens]
Length = 1556
Score = 28.9 bits (63), Expect = 3.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 140 KNFASDRSHMKDSSGNWREPPPPYPCIETGDSKMNL 175
++F+SD +H+ + W PP Y IE S L
Sbjct: 1319 RSFSSDYTHLPECQNPWDSEPPMYHTIERSKSSRYL 1354
>gi|154091314 transient receptor potential cation channel, subfamily
M, member 3 isoform k [Homo sapiens]
Length = 1707
Score = 28.9 bits (63), Expect = 3.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 140 KNFASDRSHMKDSSGNWREPPPPYPCIETGDSKMNL 175
++F+SD +H+ + W PP Y IE S L
Sbjct: 1470 RSFSSDYTHLPECQNPWDSEPPMYHTIERSKSSRYL 1505
>gi|89191868 von Willebrand factor preproprotein [Homo sapiens]
Length = 2813
Score = 28.5 bits (62), Expect = 4.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 14 ASPPRDACVYSSCYCEENIWKLCEYIKN 41
ASPP +C SS ++ +W+ C+ +K+
Sbjct: 203 ASPPSSSCNISSGEMQKGLWEQCQLLKS 230
>gi|68348709 formin binding protein 1-like isoform 1 [Homo sapiens]
Length = 551
Score = 28.1 bits (61), Expect = 5.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 32 IWKLCEYIKNHDQYPLEECYAVFISNERKMIPI 64
I+K + + L ECY F +ERK+IPI
Sbjct: 211 IYKQLQEMDERRTIKLSECYRGFADSERKVIPI 243
>gi|41581463 formin binding protein 1-like isoform 2 [Homo sapiens]
Length = 547
Score = 28.1 bits (61), Expect = 5.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 32 IWKLCEYIKNHDQYPLEECYAVFISNERKMIPI 64
I+K + + L ECY F +ERK+IPI
Sbjct: 211 IYKQLQEMDERRTIKLSECYRGFADSERKVIPI 243
>gi|4504023 glycine receptor, beta [Homo sapiens]
Length = 497
Score = 28.1 bits (61), Expect = 5.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 110 TYVEDAFKSDDDIHPQFRRKFRVIRADSYLKNFASDRSHMKDSSGNWREPPPPYPCIETG 169
T D +D I R F + D Y K + K + N ++PPP P I T
Sbjct: 410 TSKSDLRSNDFSIVGSLPRDFELSNYDCYGKPIEVNNGLGKSQAKNNKKPPPAKPVIPTA 469
Query: 170 DSKMNL 175
+++L
Sbjct: 470 AKRIDL 475
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 27.3 bits (59), Expect = 9.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 127 RRKFRVIRADSYLKNFASDRSHMKDSSGNWREPPPPYP 164
RR+ R + D+ DR H+K+ R+PPP P
Sbjct: 169 RRRRRFKKKDAVKDKEEKDRLHLKEPPPPGRQPPPAPP 206
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,401,943
Number of Sequences: 37866
Number of extensions: 502760
Number of successful extensions: 1010
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 995
Number of HSP's gapped (non-prelim): 15
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.