Search of human proteins with 89145415

Search of human proteins with 89145415

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|89145415 transmembrane protein 103 [Homo sapiens]
         (266 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|89145415 transmembrane protein 103 [Homo sapiens]                  536   e-153
gi|38176300 nestin [Homo sapiens]                                      30   2.2  
gi|41406084 glutathione peroxidase 1 isoform 1 [Homo sapiens]          29   4.9  
gi|213385323 anaphase-promoting complex subunit 5 isoform b [Hom...    28   6.4  
gi|20127553 anaphase-promoting complex subunit 5 isoform a [Homo...    28   6.4  
gi|120587023 down-regulated in metastasis [Homo sapiens]               28   8.3  
gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name...    28   8.3  
gi|151301150 sel-1 suppressor of lin-12-like 2 [Homo sapiens]          28   8.3  

>gi|89145415 transmembrane protein 103 [Homo sapiens]
          Length = 266

 Score =  536 bits (1381), Expect = e-153
 Identities = 266/266 (100%), Positives = 266/266 (100%)

Query: 1   MFVELNNLLNTTPDRAEQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSH 60
           MFVELNNLLNTTPDRAEQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSH
Sbjct: 1   MFVELNNLLNTTPDRAEQGKLTLLCDAKTDGSFLVHHFLSFYLKANCKVCFVALIQSFSH 60

Query: 61  YSIVGQKLGVSLTMARERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFE 120
           YSIVGQKLGVSLTMARERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFE
Sbjct: 61  YSIVGQKLGVSLTMARERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFE 120

Query: 121 FVREALKPVDSGEARWTYPVLLVDDLSVLLSLGMGAVAVLDFIHYCRATVCWELKGNMVV 180
           FVREALKPVDSGEARWTYPVLLVDDLSVLLSLGMGAVAVLDFIHYCRATVCWELKGNMVV
Sbjct: 121 FVREALKPVDSGEARWTYPVLLVDDLSVLLSLGMGAVAVLDFIHYCRATVCWELKGNMVV 180

Query: 181 LVHDSGDAEDEENDILLNGLSHQSHLILRAEGLATGFCRDVHGQLRILWRRPSQPAVHRD 240
           LVHDSGDAEDEENDILLNGLSHQSHLILRAEGLATGFCRDVHGQLRILWRRPSQPAVHRD
Sbjct: 181 LVHDSGDAEDEENDILLNGLSHQSHLILRAEGLATGFCRDVHGQLRILWRRPSQPAVHRD 240

Query: 241 QSFTYQYKIQDKSVSFFAKGMSPAVL 266
           QSFTYQYKIQDKSVSFFAKGMSPAVL
Sbjct: 241 QSFTYQYKIQDKSVSFFAKGMSPAVL 266


>gi|38176300 nestin [Homo sapiens]
          Length = 1621

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 84  LEGLKSAVDVVFQAQKEPH---PLQFLREANAGNLKPLFEFVREALKPVDSGEARWTYPV 140
           LE LKSA     +  K P    PL    E N G + PL + ++E L+ V+  +   T+ +
Sbjct: 826 LESLKSAGQENLETLKSPETQAPLWTPEEINQGAMNPLEKEIQEPLESVEVNQE--TFRL 883

Query: 141 LLVDDLSVLLSLG 153
           L  ++   L SLG
Sbjct: 884 LEEENQESLRSLG 896


>gi|41406084 glutathione peroxidase 1 isoform 1 [Homo sapiens]
          Length = 203

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 100 EPHPLQFLR-EANAGNLKPLFEFVREAL-KPVDSGEARWTYPVLL 142
           EP+ + F + E N     PLF F+REAL  P D   A  T P L+
Sbjct: 106 EPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLI 150


>gi|213385323 anaphase-promoting complex subunit 5 isoform b [Homo
           sapiens]
          Length = 643

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 21/122 (17%)

Query: 4   ELNNLLNTTPDRAEQGKLTLLCDAKTDGSFLVHHFLSFYL----------KAN------- 46
           ELNNLL   PD AE   L+ L + +    F   H L  Y           K+N       
Sbjct: 140 ELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAESKSNGEEGYGR 199

Query: 47  ----CKVCFVALIQSFSHYSIVGQKLGVSLTMARERGQLVFLEGLKSAVDVVFQAQKEPH 102
                 +   AL   F HY      L  ++ +A+E    V L+   S + V+ Q + + +
Sbjct: 200 SLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRSDSY 259

Query: 103 PL 104
            L
Sbjct: 260 VL 261


>gi|20127553 anaphase-promoting complex subunit 5 isoform a [Homo
           sapiens]
          Length = 755

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 21/122 (17%)

Query: 4   ELNNLLNTTPDRAEQGKLTLLCDAKTDGSFLVHHFLSFYL----------KAN------- 46
           ELNNLL   PD AE   L+ L + +    F   H L  Y           K+N       
Sbjct: 239 ELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAESKSNGEEGYGR 298

Query: 47  ----CKVCFVALIQSFSHYSIVGQKLGVSLTMARERGQLVFLEGLKSAVDVVFQAQKEPH 102
                 +   AL   F HY      L  ++ +A+E    V L+   S + V+ Q + + +
Sbjct: 299 SLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRSDSY 358

Query: 103 PL 104
            L
Sbjct: 359 VL 360


>gi|120587023 down-regulated in metastasis [Homo sapiens]
          Length = 2785

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 40   SFYLKANCKVCFVALIQSFSHYSIVGQKLGVSLTMARE 77
            +F+L  NC  C   L++    Y I  ++L V L  A E
Sbjct: 2176 NFHLVVNCFKCVTILVKKVKSYQITEKQLQVLLAYAEE 2213


>gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name
            family member (tag-184) [Homo sapiens]
          Length = 2785

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 40   SFYLKANCKVCFVALIQSFSHYSIVGQKLGVSLTMARE 77
            +F+L  NC  C   L++    Y I  ++L V L  A E
Sbjct: 2176 NFHLVVNCFKCVTILVKKVKSYQITEKQLQVLLAYAEE 2213


>gi|151301150 sel-1 suppressor of lin-12-like 2 [Homo sapiens]
          Length = 688

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 77  ERGQLVFLEGLKSAVDVVFQAQKEPHPLQFLREANAGNLKPLFEFVREALKPVDSGEARW 136
           + G  +F  G+K       Q QKE   L F + A+ GNLK + E + +AL   + G    
Sbjct: 105 DEGDQLFKMGIKVLQQSKSQKQKEEAYLLFAKAADMGNLKAM-EKMADALLFGNFGVQNI 163

Query: 137 TYPVLLVDDLS 147
           T  + L + L+
Sbjct: 164 TAAIQLYESLA 174


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,738,086
Number of Sequences: 37866
Number of extensions: 405734
Number of successful extensions: 989
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 8
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.