Search of human proteins with 87298840

Search of human proteins with 87298840

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|87298840 alkylated DNA repair protein alkB homolog [Homo
sapiens]
         (389 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|87298840 alkylated DNA repair protein alkB homolog [Homo sapi...   802   0.0  
gi|222831590 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-li...    34   0.20 
gi|51558724 ADAM metallopeptidase with thrombospondin type 1 mot...    30   2.8  
gi|224451128 eyes shut homolog isoform 1 [Homo sapiens]                29   6.3  
gi|7382480 Rho GTPase activating protein 6 isoform 4 [Homo sapiens]    29   6.3  
gi|95091988 Rho GTPase activating protein 6 isoform 3 [Homo sapi...    29   6.3  
gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo sapi...    29   6.3  
gi|151301228 formin binding protein 3 [Homo sapiens]                   29   6.3  

>gi|87298840 alkylated DNA repair protein alkB homolog [Homo
           sapiens]
          Length = 389

 Score =  802 bits (2072), Expect = 0.0
 Identities = 389/389 (100%), Positives = 389/389 (100%)

Query: 1   MGKMAAAVGSVATLATEPGEDAFRKLFRFYRQSRPGTADLEGVIDFSAAHAARGKGPGAQ 60
           MGKMAAAVGSVATLATEPGEDAFRKLFRFYRQSRPGTADLEGVIDFSAAHAARGKGPGAQ
Sbjct: 1   MGKMAAAVGSVATLATEPGEDAFRKLFRFYRQSRPGTADLEGVIDFSAAHAARGKGPGAQ 60

Query: 61  KVIKSQLNVSSVSEQNAYRAGLQPVSKWQAYGLKGYPGFIFIPNPFLPGYQWHWVKQCLK 120
           KVIKSQLNVSSVSEQNAYRAGLQPVSKWQAYGLKGYPGFIFIPNPFLPGYQWHWVKQCLK
Sbjct: 61  KVIKSQLNVSSVSEQNAYRAGLQPVSKWQAYGLKGYPGFIFIPNPFLPGYQWHWVKQCLK 120

Query: 121 LYSQKPNVCNLDKHMSKEETQDLWEQSKEFLRYKEATKRRPRSLLEKLRWVTVGYHYNWD 180
           LYSQKPNVCNLDKHMSKEETQDLWEQSKEFLRYKEATKRRPRSLLEKLRWVTVGYHYNWD
Sbjct: 121 LYSQKPNVCNLDKHMSKEETQDLWEQSKEFLRYKEATKRRPRSLLEKLRWVTVGYHYNWD 180

Query: 181 SKKYSADHYTPFPSDLGFLSEQVAAACGFEDFRAEAGILNYYRLDSTLGIHVDRSELDHS 240
           SKKYSADHYTPFPSDLGFLSEQVAAACGFEDFRAEAGILNYYRLDSTLGIHVDRSELDHS
Sbjct: 181 SKKYSADHYTPFPSDLGFLSEQVAAACGFEDFRAEAGILNYYRLDSTLGIHVDRSELDHS 240

Query: 241 KPLLSFSFGQSAIFLLGGLQRDEAPTAMFMHSGDIMIMSGFSRLLNHAVPRVLPNPEGEG 300
           KPLLSFSFGQSAIFLLGGLQRDEAPTAMFMHSGDIMIMSGFSRLLNHAVPRVLPNPEGEG
Sbjct: 241 KPLLSFSFGQSAIFLLGGLQRDEAPTAMFMHSGDIMIMSGFSRLLNHAVPRVLPNPEGEG 300

Query: 301 LPHCLEAPLPAVLPRDSMVEPCSMEDWQVCASYLKTARVNMTVRQVLATDQNFPLEPIED 360
           LPHCLEAPLPAVLPRDSMVEPCSMEDWQVCASYLKTARVNMTVRQVLATDQNFPLEPIED
Sbjct: 301 LPHCLEAPLPAVLPRDSMVEPCSMEDWQVCASYLKTARVNMTVRQVLATDQNFPLEPIED 360

Query: 361 EKRDISTEGFCHLDDQNSEVKRARINPDS 389
           EKRDISTEGFCHLDDQNSEVKRARINPDS
Sbjct: 361 EKRDISTEGFCHLDDQNSEVKRARINPDS 389


>gi|222831590 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like
           1 [Homo sapiens]
          Length = 528

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 144 WEQSKEFLRYKEATKRRPRSLLEKLRWVTVGYHYNWDSKKYSA-DHYTPFPSDLGFLSEQ 202
           W  SK+   Y+E  K+ P S  E   W+  G      +   SA   Y    SD G  +  
Sbjct: 142 WSYSKQ---YREKRKQNPHSENEDSDWLITGGSSGGSAAAVSAFTCYAALGSDTGGSTRN 198

Query: 203 VAAACGFEDFRAEAGILNYYRL 224
            AA CG   F+   G+++ + L
Sbjct: 199 PAAHCGLVGFKPSYGLVSRHGL 220


>gi|51558724 ADAM metallopeptidase with thrombospondin type 1 motif,
           12 preproprotein [Homo sapiens]
          Length = 1594

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 109 GYQWHWVKQCLKLYSQKPNVCNLDKHMSKEETQDLWEQSKEFLRYKEATKRRPRSLLEKL 168
           GY  H V +  K+   K   C L   ++  + Q+LW +  E  R+   ++   R  + K 
Sbjct: 188 GYHPHIVYRRQKVPETKEPTCGLKDSVNISQKQELWREKWE--RHNLPSRSLSRRSISKE 245

Query: 169 RWV 171
           RWV
Sbjct: 246 RWV 248


>gi|224451128 eyes shut homolog isoform 1 [Homo sapiens]
          Length = 3144

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 11/141 (7%)

Query: 163  SLLEKLRWVTVGYHYNWDSKKYSADHYTPFPSDLGFLSEQVAAACGFEDFRAEAGILN-- 220
            S L   R   + +HY +  K   A++++   ++L F + Q       +DF A  G+LN  
Sbjct: 2428 SFLAYSRISDISFHYEFHLKFQLANNHSALQNNLIFFTGQKGHGLNGDDFLA-VGLLNGS 2486

Query: 221  -YYRLDSTLGIHVDRSE-LDHSKPLLSFSFGQSAIFLLGGLQRDEAPTAMFMHSGDIMIM 278
              Y  +   GI   RSE L+ S  + +   G+   F  G L+ D+      +  G ++ +
Sbjct: 2487 VVYSYNLGSGIASIRSEPLNLSLGVHTVHLGK--FFQEGWLKVDDHKNKSIIAPGRLVGL 2544

Query: 279  SGFSRL----LNHAVPRVLPN 295
            + FS+      +   P +LPN
Sbjct: 2545 NVFSQFYVGGYSEYTPDLLPN 2565


>gi|7382480 Rho GTPase activating protein 6 isoform 4 [Homo sapiens]
          Length = 771

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 151 LRYKEATKRRPRSLLEKLRWVTVGYHYNWDSKKYSADHYTPFPSDLGFLSEQVAAACGFE 210
           LR K +    P  L  ++ +   G H + DS K S+   +P+ ++   LSE+   A   +
Sbjct: 425 LRRKASQSSSPDMLQSEVSFSVGGRHSSTDSNKASSGDISPYDNNSPVLSERSLLA--MQ 482

Query: 211 DFRAEAGILNYYRLDSTLGI--HVDRSELDHSKP 242
           +  A  G    YR+     +  H+  S+   S P
Sbjct: 483 EDAAPGGSEKLYRVPGQFMLVGHLSSSKSRESSP 516


>gi|95091988 Rho GTPase activating protein 6 isoform 3 [Homo
           sapiens]
          Length = 765

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 151 LRYKEATKRRPRSLLEKLRWVTVGYHYNWDSKKYSADHYTPFPSDLGFLSEQVAAACGFE 210
           LR K +    P  L  ++ +   G H + DS K S+   +P+ ++   LSE+   A   +
Sbjct: 628 LRRKASQSSSPDMLQSEVSFSVGGRHSSTDSNKASSGDISPYDNNSPVLSERSLLA--MQ 685

Query: 211 DFRAEAGILNYYRLDSTLGI--HVDRSELDHSKP 242
           +  A  G    YR+     +  H+  S+   S P
Sbjct: 686 EDAAPGGSEKLYRVPGQFMLVGHLSSSKSRESSP 719


>gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo
           sapiens]
          Length = 974

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 151 LRYKEATKRRPRSLLEKLRWVTVGYHYNWDSKKYSADHYTPFPSDLGFLSEQVAAACGFE 210
           LR K +    P  L  ++ +   G H + DS K S+   +P+ ++   LSE+   A   +
Sbjct: 628 LRRKASQSSSPDMLQSEVSFSVGGRHSSTDSNKASSGDISPYDNNSPVLSERSLLA--MQ 685

Query: 211 DFRAEAGILNYYRLDSTLGI--HVDRSELDHSKP 242
           +  A  G    YR+     +  H+  S+   S P
Sbjct: 686 EDAAPGGSEKLYRVPGQFMLVGHLSSSKSRESSP 719


>gi|151301228 formin binding protein 3 [Homo sapiens]
          Length = 930

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 175 YHYNWDSKKYSADHYTPFPSDLGFLSEQVAAACGFEDFRAEAGILNYY 222
           Y+YN ++K+ + +     P DL   +EQ+ + C ++++++++G   YY
Sbjct: 130 YYYNTETKQSTWEK----PDDLKTPAEQLLSKCPWKEYKSDSGKPYYY 173


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,105,529
Number of Sequences: 37866
Number of extensions: 770656
Number of successful extensions: 1844
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1842
Number of HSP's gapped (non-prelim): 8
length of query: 389
length of database: 18,247,518
effective HSP length: 104
effective length of query: 285
effective length of database: 14,309,454
effective search space: 4078194390
effective search space used: 4078194390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.