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Search of human proteins with 87080807
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|87080807 basement membrane-induced gene isoform 1 [Homo
sapiens]
(260 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|87080807 basement membrane-induced gene isoform 1 [Homo sapiens] 527 e-150
gi|157738677 basement membrane-induced gene isoform 3 [Homo sapi... 438 e-123
gi|87080817 basement membrane-induced gene isoform 2 [Homo sapiens] 160 8e-40
gi|58218986 thymocyte selection pathway associated [Homo sapiens] 116 2e-26
gi|239747014 PREDICTED: similar to tektin 4 [Homo sapiens] 32 0.55
gi|83627721 NIMA-related kinase 5 [Homo sapiens] 31 0.95
gi|31317301 nitric oxide synthase 1 (neuronal) adaptor protein i... 28 6.1
gi|35493952 ubiquitin protein ligase E3B [Homo sapiens] 28 8.0
gi|35493959 ubiquitin protein ligase E3B [Homo sapiens] 28 8.0
gi|42741652 RPA-binding trans-activator [Homo sapiens] 28 8.0
gi|15718684 RPA-binding trans-activator [Homo sapiens] 28 8.0
>gi|87080807 basement membrane-induced gene isoform 1 [Homo sapiens]
Length = 260
Score = 527 bits (1358), Expect = e-150
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 1 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
Sbjct: 1 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
Query: 61 VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE 120
VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE
Sbjct: 61 VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE 120
Query: 121 GRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQ 180
GRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQ
Sbjct: 121 GRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQ 180
Query: 181 VLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMHIFSSLRIAATRSAAQTQGEDLARVH 240
VLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMHIFSSLRIAATRSAAQTQGEDLARVH
Sbjct: 181 VLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMHIFSSLRIAATRSAAQTQGEDLARVH 240
Query: 241 QGWLQYVQQDSCPQEGPQAR 260
QGWLQYVQQDSCPQEGPQAR
Sbjct: 241 QGWLQYVQQDSCPQEGPQAR 260
>gi|157738677 basement membrane-induced gene isoform 3 [Homo
sapiens]
Length = 643
Score = 438 bits (1126), Expect = e-123
Identities = 215/216 (99%), Positives = 216/216 (100%)
Query: 1 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
Sbjct: 1 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
Query: 61 VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE 120
VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE
Sbjct: 61 VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE 120
Query: 121 GRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQ 180
GRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQ
Sbjct: 121 GRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQ 180
Query: 181 VLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMHI 216
VLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMH+
Sbjct: 181 VLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMHM 216
>gi|87080817 basement membrane-induced gene isoform 2 [Homo
sapiens]
Length = 123
Score = 160 bits (406), Expect = 8e-40
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
Sbjct: 1 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
Query: 61 VCENPKTSQTMELAPNFQ 78
VCENPKTSQTMELAPNFQ
Sbjct: 61 VCENPKTSQTMELAPNFQ 78
Score = 94.7 bits (234), Expect = 7e-20
Identities = 45/52 (86%), Positives = 47/52 (90%)
Query: 209 EIQAIMHIFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEGPQAR 260
E+ +FSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEGPQAR
Sbjct: 72 ELAPNFQVFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEGPQAR 123
>gi|58218986 thymocyte selection pathway associated [Homo sapiens]
Length = 641
Score = 116 bits (290), Expect = 2e-26
Identities = 77/231 (33%), Positives = 119/231 (51%), Gaps = 22/231 (9%)
Query: 6 LQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKVVC--- 62
L++FV +LD +LPRVL + +G+Y EGSIYE+ GNECC STG++IK+T ++++K++
Sbjct: 5 LEEFVHSLDLRTLPRVLEIQAGIYLEGSIYEMFGNECCFSTGEVIKITGLKVKKIIAEIC 64
Query: 63 ---ENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQL-PTCFMSTHRIV 118
E ++ Q EL NF G F + Y T+EE+ +L CF I
Sbjct: 65 EQIEGCESLQPFELPMNFPGLFKIVADKTPYLTMEEITRTIHIGPSRLGHPCFYHQKDIK 124
Query: 119 TEGRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTL 178
E ++ + + +ML +V G C + Q +LPLSQ+G F+ E TL
Sbjct: 125 LENLIIKQGEQIMLNSVEEIDGEIMVSCAVARNHQTHSFNLPLSQEGEFYECEDERIYTL 184
Query: 179 LQVLQDPALKD----LVLTCPTLPWHS-----------LILRPQYEIQAIM 214
++++ K+ + LT + W S LIL+P YEIQ +M
Sbjct: 185 KEIVEWKIPKNRTRTVNLTDFSNKWDSTNPFPKDFYGTLILKPVYEIQGVM 235
>gi|239747014 PREDICTED: similar to tektin 4 [Homo sapiens]
Length = 507
Score = 32.0 bits (71), Expect = 0.55
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 67 TSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRI 117
TS + E AP+ + TP NTP+ LEEL + T ++L S H +
Sbjct: 415 TSSSQEEAPSDKPQLTPPNTPKLVSELEELYKSITALWEKLLQAEQSLHNL 465
>gi|83627721 NIMA-related kinase 5 [Homo sapiens]
Length = 708
Score = 31.2 bits (69), Expect = 0.95
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 170 WEPSAPRTLLQVLQDPALKDLVLTCPTLP 198
W+ AP+TLLQ++ A+ D+ TCPT P
Sbjct: 657 WDGGAPQTLLQMM---AVADITSTCPTGP 682
>gi|31317301 nitric oxide synthase 1 (neuronal) adaptor protein
isoform 1 [Homo sapiens]
Length = 506
Score = 28.5 bits (62), Expect = 6.1
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 147 VLGMEGQQVILH----LPLSQKGPFWTWEPSAPRTLLQVLQDPALKDLVLTCPT--LPWH 200
++ ++G +VIL L L QK WTW+ S + V+QDP + ++ + L
Sbjct: 75 MVSVDGVKVILKKKKKLLLLQKKE-WTWDESK----MLVMQDPIYRIFYVSHDSQDLKIF 129
Query: 201 SLILRPQYEIQAIMHIFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQE 255
S I R ++F S + + +T G+ H+ LQ+ QQ++ QE
Sbjct: 130 SYIARDGASNIFRCNVFKSKKKSQAMRIVRTVGQAFEVCHKLSLQHTQQNADGQE 184
>gi|35493952 ubiquitin protein ligase E3B [Homo sapiens]
Length = 1068
Score = 28.1 bits (61), Expect = 8.0
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 16 ASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKVVCENPKTSQTMELAP 75
AS+ +LR G + + + N C L L +TQ+RLQ + + +L P
Sbjct: 438 ASVRNILRPVGGKRVDSAEVQKVCNICVLYQTSLTTLTQIRLQILT----GLTYLDDLLP 493
Query: 76 NFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFM 112
+ L + E ++ T+ SKQL M
Sbjct: 494 KLWAFICELGPHGGLKLFLECLNNDTEESKQLLAMLM 530
>gi|35493959 ubiquitin protein ligase E3B [Homo sapiens]
Length = 1068
Score = 28.1 bits (61), Expect = 8.0
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 16 ASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKVVCENPKTSQTMELAP 75
AS+ +LR G + + + N C L L +TQ+RLQ + + +L P
Sbjct: 438 ASVRNILRPVGGKRVDSAEVQKVCNICVLYQTSLTTLTQIRLQILT----GLTYLDDLLP 493
Query: 76 NFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFM 112
+ L + E ++ T+ SKQL M
Sbjct: 494 KLWAFICELGPHGGLKLFLECLNNDTEESKQLLAMLM 530
>gi|42741652 RPA-binding trans-activator [Homo sapiens]
Length = 196
Score = 28.1 bits (61), Expect = 8.0
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 158 HLPLSQKGPFWTWEP----SAPRTLLQVLQDPALKDLVLTCPTLPWHSLILRPQYEIQAI 213
H L ++ W W P S + LL++ D + L P+L H LI ++QA
Sbjct: 9 HSDLEEEEERWEWSPAGLQSYQQALLRISLDKVQRSLGPRAPSLRRHVLIHNTLQQLQAA 68
Query: 214 MHI 216
+ +
Sbjct: 69 LRL 71
>gi|15718684 RPA-binding trans-activator [Homo sapiens]
Length = 196
Score = 28.1 bits (61), Expect = 8.0
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 158 HLPLSQKGPFWTWEP----SAPRTLLQVLQDPALKDLVLTCPTLPWHSLILRPQYEIQAI 213
H L ++ W W P S + LL++ D + L P+L H LI ++QA
Sbjct: 9 HSDLEEEEERWEWSPAGLQSYQQALLRISLDKVQRSLGPRAPSLRRHVLIHNTLQQLQAA 68
Query: 214 MHI 216
+ +
Sbjct: 69 LRL 71
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,157,246
Number of Sequences: 37866
Number of extensions: 430536
Number of successful extensions: 909
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 900
Number of HSP's gapped (non-prelim): 12
length of query: 260
length of database: 18,247,518
effective HSP length: 100
effective length of query: 160
effective length of database: 14,460,918
effective search space: 2313746880
effective search space used: 2313746880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.