BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|86792933 hypothetical protein LOC79133 isoform 2 [Homo sapiens] (317 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|86792933 hypothetical protein LOC79133 isoform 2 [Homo sapiens] 656 0.0 gi|40018642 hypothetical protein LOC79133 isoform 1 [Homo sapiens] 594 e-170 gi|239751768 PREDICTED: hypothetical protein XP_002347973 isofor... 30 2.8 gi|239751766 PREDICTED: hypothetical protein XP_002347974 isofor... 30 2.8 gi|239751764 PREDICTED: hypothetical protein XP_002347975 isofor... 30 2.8 gi|4557699 keratin 12 [Homo sapiens] 29 6.3 >gi|86792933 hypothetical protein LOC79133 isoform 2 [Homo sapiens] Length = 317 Score = 656 bits (1693), Expect = 0.0 Identities = 317/317 (100%), Positives = 317/317 (100%) Query: 1 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA 60 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA Sbjct: 1 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA 60 Query: 61 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKLQLFHCRKLLE 120 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKLQLFHCRKLLE Sbjct: 61 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKLQLFHCRKLLE 120 Query: 121 SFSKLTLQKMLCLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETER 180 SFSKLTLQKMLCLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETER Sbjct: 121 SFSKLTLQKMLCLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETER 180 Query: 181 EGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCAW 240 EGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCAW Sbjct: 181 EGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCAW 240 Query: 241 NRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIGWKYHESQARPAERGSATVSF 300 NRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIGWKYHESQARPAERGSATVSF Sbjct: 241 NRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIGWKYHESQARPAERGSATVSF 300 Query: 301 GELGKINNLMPPGKKSQ 317 GELGKINNLMPPGKKSQ Sbjct: 301 GELGKINNLMPPGKKSQ 317 >gi|40018642 hypothetical protein LOC79133 isoform 1 [Homo sapiens] Length = 345 Score = 594 bits (1532), Expect = e-170 Identities = 298/345 (86%), Positives = 303/345 (87%), Gaps = 28/345 (8%) Query: 1 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA 60 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA Sbjct: 1 MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA 60 Query: 61 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNK------LQLFH 114 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNK Q Sbjct: 61 RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI 120 Query: 115 CRKLLESFSKLTLQKM----------------------LCLHWVNDLPRALEQIHYILKP 152 L++ S+ + + L LHWVNDLPRALEQIHYILKP Sbjct: 121 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP 180 Query: 153 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD 212 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD Sbjct: 181 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD 240 Query: 213 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT 272 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT Sbjct: 241 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT 300 Query: 273 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ 317 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ Sbjct: 301 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ 345 >gi|239751768 PREDICTED: hypothetical protein XP_002347973 isoform 1 [Homo sapiens] Length = 479 Score = 30.0 bits (66), Expect = 2.8 Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 168 ELRCSLQLAETEREGGFSPHISPFTAVNDLGH 199 E+RC ++ + +EG F P + PFT++ H Sbjct: 45 EIRCQVERQQGHQEGHFRPAVIPFTSMQCTAH 76 >gi|239751766 PREDICTED: hypothetical protein XP_002347974 isoform 2 [Homo sapiens] Length = 479 Score = 30.0 bits (66), Expect = 2.8 Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 168 ELRCSLQLAETEREGGFSPHISPFTAVNDLGH 199 E+RC ++ + +EG F P + PFT++ H Sbjct: 45 EIRCQVERQQGHQEGHFRPAVIPFTSMQCTAH 76 >gi|239751764 PREDICTED: hypothetical protein XP_002347975 isoform 3 [Homo sapiens] Length = 543 Score = 30.0 bits (66), Expect = 2.8 Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 168 ELRCSLQLAETEREGGFSPHISPFTAVNDLGH 199 E+RC ++ + +EG F P + PFT++ H Sbjct: 109 EIRCQVERQQGHQEGHFRPAVIPFTSMQCTAH 140 >gi|4557699 keratin 12 [Homo sapiens] Length = 494 Score = 28.9 bits (63), Expect = 6.3 Identities = 19/56 (33%), Positives = 25/56 (44%) Query: 210 TVDTDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNE 265 T D Q +Y + L+EDL+ S N + LL D AA +R Y NE Sbjct: 166 TGTADASQSDYSKYYPLIEDLRNKIISASIGNAQLLLQIDNARLAAEDFRMKYENE 221 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.321 0.138 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,192,828 Number of Sequences: 37866 Number of extensions: 608004 Number of successful extensions: 1136 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1129 Number of HSP's gapped (non-prelim): 7 length of query: 317 length of database: 18,247,518 effective HSP length: 102 effective length of query: 215 effective length of database: 14,385,186 effective search space: 3092814990 effective search space used: 3092814990 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.