Search of human proteins with 86792933

Search of human proteins with 86792933

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|86792933 hypothetical protein LOC79133 isoform 2 [Homo
sapiens]
         (317 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|86792933 hypothetical protein LOC79133 isoform 2 [Homo sapiens]    656   0.0  
gi|40018642 hypothetical protein LOC79133 isoform 1 [Homo sapiens]    594   e-170
gi|239751768 PREDICTED: hypothetical protein XP_002347973 isofor...    30   2.8  
gi|239751766 PREDICTED: hypothetical protein XP_002347974 isofor...    30   2.8  
gi|239751764 PREDICTED: hypothetical protein XP_002347975 isofor...    30   2.8  
gi|4557699 keratin 12 [Homo sapiens]                                   29   6.3  

>gi|86792933 hypothetical protein LOC79133 isoform 2 [Homo sapiens]
          Length = 317

 Score =  656 bits (1693), Expect = 0.0
 Identities = 317/317 (100%), Positives = 317/317 (100%)

Query: 1   MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA 60
           MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA
Sbjct: 1   MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA 60

Query: 61  RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKLQLFHCRKLLE 120
           RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKLQLFHCRKLLE
Sbjct: 61  RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKLQLFHCRKLLE 120

Query: 121 SFSKLTLQKMLCLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETER 180
           SFSKLTLQKMLCLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETER
Sbjct: 121 SFSKLTLQKMLCLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETER 180

Query: 181 EGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCAW 240
           EGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCAW
Sbjct: 181 EGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCAW 240

Query: 241 NRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIGWKYHESQARPAERGSATVSF 300
           NRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIGWKYHESQARPAERGSATVSF
Sbjct: 241 NRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIGWKYHESQARPAERGSATVSF 300

Query: 301 GELGKINNLMPPGKKSQ 317
           GELGKINNLMPPGKKSQ
Sbjct: 301 GELGKINNLMPPGKKSQ 317


>gi|40018642 hypothetical protein LOC79133 isoform 1 [Homo sapiens]
          Length = 345

 Score =  594 bits (1532), Expect = e-170
 Identities = 298/345 (86%), Positives = 303/345 (87%), Gaps = 28/345 (8%)

Query: 1   MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA 60
           MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA
Sbjct: 1   MLRPAGLWRLCRRPWAARVPAENLGRREVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAA 60

Query: 61  RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNK------LQLFH 114
           RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNK       Q   
Sbjct: 61  RQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADI 120

Query: 115 CRKLLESFSKLTLQKM----------------------LCLHWVNDLPRALEQIHYILKP 152
               L++ S+  +  +                      L LHWVNDLPRALEQIHYILKP
Sbjct: 121 AENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKP 180

Query: 153 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD 212
           DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD
Sbjct: 181 DGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVD 240

Query: 213 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT 272
           TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT
Sbjct: 241 TDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPAT 300

Query: 273 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ 317
           YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ
Sbjct: 301 YQIYYMIGWKYHESQARPAERGSATVSFGELGKINNLMPPGKKSQ 345


>gi|239751768 PREDICTED: hypothetical protein XP_002347973 isoform 1
           [Homo sapiens]
          Length = 479

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 168 ELRCSLQLAETEREGGFSPHISPFTAVNDLGH 199
           E+RC ++  +  +EG F P + PFT++    H
Sbjct: 45  EIRCQVERQQGHQEGHFRPAVIPFTSMQCTAH 76


>gi|239751766 PREDICTED: hypothetical protein XP_002347974 isoform 2
           [Homo sapiens]
          Length = 479

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 168 ELRCSLQLAETEREGGFSPHISPFTAVNDLGH 199
           E+RC ++  +  +EG F P + PFT++    H
Sbjct: 45  EIRCQVERQQGHQEGHFRPAVIPFTSMQCTAH 76


>gi|239751764 PREDICTED: hypothetical protein XP_002347975 isoform 3
           [Homo sapiens]
          Length = 543

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 168 ELRCSLQLAETEREGGFSPHISPFTAVNDLGH 199
           E+RC ++  +  +EG F P + PFT++    H
Sbjct: 109 EIRCQVERQQGHQEGHFRPAVIPFTSMQCTAH 140


>gi|4557699 keratin 12 [Homo sapiens]
          Length = 494

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 19/56 (33%), Positives = 25/56 (44%)

Query: 210 TVDTDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNE 265
           T   D  Q +Y   + L+EDL+    S    N + LL  D    AA  +R  Y NE
Sbjct: 166 TGTADASQSDYSKYYPLIEDLRNKIISASIGNAQLLLQIDNARLAAEDFRMKYENE 221


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,192,828
Number of Sequences: 37866
Number of extensions: 608004
Number of successful extensions: 1136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1129
Number of HSP's gapped (non-prelim): 7
length of query: 317
length of database: 18,247,518
effective HSP length: 102
effective length of query: 215
effective length of database: 14,385,186
effective search space: 3092814990
effective search space used: 3092814990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.