Search of human proteins with 86792634

Search of human proteins with 86792634

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|86792634 ATPase, H+ transporting, lysosomal 21kDa, V0
subunit b isoform 2 [Homo sapiens]
         (158 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|86792634 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit...   310   4e-85
gi|4757816 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit ...   310   4e-85
gi|4502313 ATPase, H+ transporting, lysosomal, V0 subunit c [Hom...    92   1e-19
gi|4759144 solute carrier family 9 (sodium/hydrogen exchanger), ...    36   0.016
gi|4557535 solute carrier family 26, member 3 [Homo sapiens]           31   0.50 
gi|50659069 ATP synthase, H+ transporting, mitochondrial F0 comp...    29   1.5  
gi|4885081 ATP synthase, H+ transporting, mitochondrial F0 compl...    29   1.5  
gi|85794840 ATP synthase, H+ transporting, mitochondrial F0 comp...    29   1.5  
gi|4502301 ATP synthase, H+ transporting, mitochondrial F0 compl...    29   1.5  
gi|50659074 ATP synthase, H+ transporting, mitochondrial F0 comp...    29   1.5  
gi|50593533 ATP synthase, H+ transporting, mitochondrial F0 comp...    29   1.5  
gi|155722985 SMC5 protein [Homo sapiens]                               29   1.9  
gi|4507033 solute carrier family 5 (sodium/glucose cotransporter...    27   5.6  

>gi|86792634 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
           isoform 2 [Homo sapiens]
          Length = 158

 Score =  310 bits (793), Expect = 4e-85
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIM 60
           MWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIM
Sbjct: 1   MWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIM 60

Query: 61  AIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADA 120
           AIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADA
Sbjct: 61  AIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADA 120

Query: 121 QNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD 158
           QNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD
Sbjct: 121 QNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD 158


>gi|4757816 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
           isoform 1 [Homo sapiens]
          Length = 205

 Score =  310 bits (793), Expect = 4e-85
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIM 60
           MWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIM
Sbjct: 48  MWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIM 107

Query: 61  AIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADA 120
           AIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADA
Sbjct: 108 AIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADA 167

Query: 121 QNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD 158
           QNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD
Sbjct: 168 QNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD 205


>gi|4502313 ATPase, H+ transporting, lysosomal, V0 subunit c [Homo
           sapiens]
          Length = 155

 Score = 92.4 bits (228), Expect = 1e-19
 Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 10/149 (6%)

Query: 5   LGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVI 64
           +G   A+  S +GAA+G   +G+ I    V  P    K+++ ++    +AIYG+++A++I
Sbjct: 17  MGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLI 76

Query: 65  SNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPS 124
           +N     S  D  ++     +  +   GAGL+VGLS L  G  +GIVG       AQ P 
Sbjct: 77  AN-----SLNDDISL-----YKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPR 126

Query: 125 LFVKILIVEIFGSAIGLFGVIVAILQTSR 153
           LFV ++++ IF   +GL+G+IVA++ +++
Sbjct: 127 LFVGMILILIFAEVLGLYGLIVALILSTK 155



 Score = 31.6 bits (70), Expect = 0.29
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 84  YHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFG 143
           Y + +++ GA   +  S L         G+G A      P   +K +I  +    I ++G
Sbjct: 10  YASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYG 69

Query: 144 VIVAIL 149
           ++VA+L
Sbjct: 70  LVVAVL 75


>gi|4759144 solute carrier family 9 (sodium/hydrogen exchanger),
           isoform 5 [Homo sapiens]
          Length = 896

 Score = 35.8 bits (81), Expect = 0.016
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 29/160 (18%)

Query: 7   IGLAISLSVVGAAWGIYITGSSIIG---GGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIV 63
           +G  ++ +VVG  W  + TG+++ G    G+ APR++   L  ++F   +          
Sbjct: 132 LGAILTYAVVGTLWNAFTTGAALWGLQQAGLVAPRVQAGLLDFLLFGSLI---------- 181

Query: 64  ISNMAEPFSATDPKAI------GHRNYHAGYSMFGAG-LTVGLSNLFCGVCVGIVGSGAA 116
                   SA DP A+       H N      +FG   L   ++ +   VC   V  G+A
Sbjct: 182 --------SAVDPVAVLAVFEEVHVNETLFIIVFGESLLNDAVTVVLYKVCNSFVEMGSA 233

Query: 117 LADAQNPSLFV-KILIVEIFGSAIGLFGVIVAILQTSRVK 155
              A +    V  + +V + G+A+GL    +  L T   K
Sbjct: 234 NVQATDYLKGVASLFVVSLGGAAVGLVFAFLLALTTRFTK 273


>gi|4557535 solute carrier family 26, member 3 [Homo sapiens]
          Length = 764

 Score = 30.8 bits (68), Expect = 0.50
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 95  LTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGL-----FGVIVAIL 149
           + +GL N+ CGV  G  GS A    A   S   K  I  + G+ I L      G ++A L
Sbjct: 376 IALGLGNIVCGVFRGFAGSTALSRSAVQESTGGKTQIAGLIGAIIVLIVVLAIGFLLAPL 435

Query: 150 QTS 152
           Q S
Sbjct: 436 QKS 438


>gi|50659069 ATP synthase, H+ transporting, mitochondrial F0
           complex, subunit C1 precursor [Homo sapiens]
          Length = 136

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 82  RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 136
           R+        GAG  TVG++    G  +G V     +  A+NPSL  ++    I G    
Sbjct: 61  RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 118

Query: 137 SAIGLFGVIVAIL 149
            A+GLF ++VA L
Sbjct: 119 EAMGLFCLMVAFL 131


>gi|4885081 ATP synthase, H+ transporting, mitochondrial F0 complex,
           subunit C1 precursor [Homo sapiens]
          Length = 136

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 82  RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 136
           R+        GAG  TVG++    G  +G V     +  A+NPSL  ++    I G    
Sbjct: 61  RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 118

Query: 137 SAIGLFGVIVAIL 149
            A+GLF ++VA L
Sbjct: 119 EAMGLFCLMVAFL 131


>gi|85794840 ATP synthase, H+ transporting, mitochondrial F0
           complex, subunit C2 isoform b precursor [Homo sapiens]
          Length = 198

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 82  RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 136
           R+        GAG  TVG++    G  +G V     +  A+NPSL  ++    I G    
Sbjct: 123 RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 180

Query: 137 SAIGLFGVIVAIL 149
            A+GLF ++VA L
Sbjct: 181 EAMGLFCLMVAFL 193


>gi|4502301 ATP synthase, H+ transporting, mitochondrial F0 complex,
           subunit C3 precursor [Homo sapiens]
          Length = 142

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 82  RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 136
           R+        GAG  TVG++    G  +G V     +  A+NPSL  ++    I G    
Sbjct: 67  RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 124

Query: 137 SAIGLFGVIVAIL 149
            A+GLF ++VA L
Sbjct: 125 EAMGLFCLMVAFL 137


>gi|50659074 ATP synthase, H+ transporting, mitochondrial F0
           complex, subunit C3 precursor [Homo sapiens]
          Length = 142

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 82  RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 136
           R+        GAG  TVG++    G  +G V     +  A+NPSL  ++    I G    
Sbjct: 67  RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 124

Query: 137 SAIGLFGVIVAIL 149
            A+GLF ++VA L
Sbjct: 125 EAMGLFCLMVAFL 137


>gi|50593533 ATP synthase, H+ transporting, mitochondrial F0
           complex, subunit C2 isoform a precursor [Homo sapiens]
          Length = 157

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 82  RNYHAGYSMFGAGL-TVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFG---- 136
           R+        GAG  TVG++    G  +G V     +  A+NPSL  ++    I G    
Sbjct: 82  RDIDTAAKFIGAGAATVGVAG--SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 139

Query: 137 SAIGLFGVIVAIL 149
            A+GLF ++VA L
Sbjct: 140 EAMGLFCLMVAFL 152


>gi|155722985 SMC5 protein [Homo sapiens]
          Length = 1101

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 98  GLSNLFCGVCVGIVGSGAALADAQNPSLFVK 128
           G S++ C +C+G+ G  A +  A     FVK
Sbjct: 85  GKSSIVCAICLGLAGKPAFMGRADKVGFFVK 115


>gi|4507033 solute carrier family 5 (sodium/glucose cotransporter),
           member 2 [Homo sapiens]
          Length = 672

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 86  AGYSM--FGAGLTVGLSNLFCGVCVGIVGSGA----ALADAQNPSLFVKILIVEIFGSAI 139
           AG SM  +  G ++  SN+  G  VG+ G+GA    A+A  +  +LFV +L+  +F    
Sbjct: 58  AGRSMVWWPVGASLFASNIGSGHFVGLAGTGAASGLAVAGFEWNALFVVLLLGWLFAPVY 117

Query: 140 GLFGVI 145
              GVI
Sbjct: 118 LTAGVI 123


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.141    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,981,492
Number of Sequences: 37866
Number of extensions: 187468
Number of successful extensions: 433
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 15
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.