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Search of human proteins with 8393013
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8393013 SET domain containing 4 isoform a [Homo sapiens]
(440 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8393013 SET domain containing 4 isoform a [Homo sapiens] 899 0.0
gi|55953063 SET domain containing 4 isoform c [Homo sapiens] 622 e-178
gi|40068481 SET domain containing 3 isoform a [Homo sapiens] 71 2e-12
gi|40068483 SET domain containing 3 isoform b [Homo sapiens] 48 2e-05
gi|238550107 SET domain containing 6 isoform a [Homo sapiens] 46 6e-05
gi|238550105 SET domain containing 6 isoform b [Homo sapiens] 46 6e-05
gi|156616308 SET and MYND domain containing 4 [Homo sapiens] 36 0.061
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 31 2.0
gi|239753559 PREDICTED: hypothetical protein XP_002345696 [Homo ... 31 2.6
gi|239748103 PREDICTED: hypothetical protein [Homo sapiens] 31 2.6
gi|239741999 PREDICTED: hypothetical protein XP_002342370 [Homo ... 31 2.6
gi|15619015 protein kinase, cAMP-dependent, catalytic, gamma [Ho... 30 3.3
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 30 4.4
gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens] 30 4.4
gi|217272890 palmitoyl-protein thioesterase 1 isoform 2 precurso... 29 7.4
gi|4506031 palmitoyl-protein thioesterase 1 isoform 1 precursor ... 29 7.4
gi|157785656 nudix motif 7 [Homo sapiens] 29 7.4
>gi|8393013 SET domain containing 4 isoform a [Homo sapiens]
Length = 440
Score = 899 bits (2324), Expect = 0.0
Identities = 440/440 (100%), Positives = 440/440 (100%)
Query: 1 MQKGKGRTSRIRRRKLCGSSESRGVNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGR 60
MQKGKGRTSRIRRRKLCGSSESRGVNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGR
Sbjct: 1 MQKGKGRTSRIRRRKLCGSSESRGVNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGR 60
Query: 61 GLMSQTSLQEGQMIISLPESCLLTTDTVIRSYLGAYITKWKPPPSPLLALCTFLVSEKHA 120
GLMSQTSLQEGQMIISLPESCLLTTDTVIRSYLGAYITKWKPPPSPLLALCTFLVSEKHA
Sbjct: 61 GLMSQTSLQEGQMIISLPESCLLTTDTVIRSYLGAYITKWKPPPSPLLALCTFLVSEKHA 120
Query: 121 GHRSLWKPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAEEQRAHVQEFFASSRDFFSSL 180
GHRSLWKPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAEEQRAHVQEFFASSRDFFSSL
Sbjct: 121 GHRSLWKPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAEEQRAHVQEFFASSRDFFSSL 180
Query: 181 QPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQRECLSAEPDTCALAPYLDLLNHSPH 240
QPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQRECLSAEPDTCALAPYLDLLNHSPH
Sbjct: 181 QPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQRECLSAEPDTCALAPYLDLLNHSPH 240
Query: 241 VQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQRLFLEYGFVSVHNPHACVYVSR 300
VQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQRLFLEYGFVSVHNPHACVYVSR
Sbjct: 241 VQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQRLFLEYGFVSVHNPHACVYVSR 300
Query: 301 EILVKYLPSTDKQMDKKISILKDHGYIENLTFGWDGPSWRLLTALKLLCLEAEKFTCWKK 360
EILVKYLPSTDKQMDKKISILKDHGYIENLTFGWDGPSWRLLTALKLLCLEAEKFTCWKK
Sbjct: 301 EILVKYLPSTDKQMDKKISILKDHGYIENLTFGWDGPSWRLLTALKLLCLEAEKFTCWKK 360
Query: 361 VLLGEVISDTNEKTSLDIAQKICYYFIEETNAVLQKVSHMKDEKEALINQLTLVESLWTE 420
VLLGEVISDTNEKTSLDIAQKICYYFIEETNAVLQKVSHMKDEKEALINQLTLVESLWTE
Sbjct: 361 VLLGEVISDTNEKTSLDIAQKICYYFIEETNAVLQKVSHMKDEKEALINQLTLVESLWTE 420
Query: 421 ELKILRASAETLHSLQTAFT 440
ELKILRASAETLHSLQTAFT
Sbjct: 421 ELKILRASAETLHSLQTAFT 440
>gi|55953063 SET domain containing 4 isoform c [Homo sapiens]
Length = 307
Score = 622 bits (1603), Expect = e-178
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MQKGKGRTSRIRRRKLCGSSESRGVNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGR 60
MQKGKGRTSRIRRRKLCGSSESRGVNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGR
Sbjct: 1 MQKGKGRTSRIRRRKLCGSSESRGVNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGR 60
Query: 61 GLMSQTSLQEGQMIISLPESCLLTTDTVIRSYLGAYITKWKPPPSPLLALCTFLVSEKHA 120
GLMSQTSLQEGQMIISLPESCLLTTDTVIRSYLGAYITKWKPPPSPLLALCTFLVSEKHA
Sbjct: 61 GLMSQTSLQEGQMIISLPESCLLTTDTVIRSYLGAYITKWKPPPSPLLALCTFLVSEKHA 120
Query: 121 GHRSLWKPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAEEQRAHVQEFFASSRDFFSSL 180
GHRSLWKPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAEEQRAHVQEFFASSRDFFSSL
Sbjct: 121 GHRSLWKPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAEEQRAHVQEFFASSRDFFSSL 180
Query: 181 QPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQRECLSAEPDTCALAPYLDLLNHSPH 240
QPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQRECLSAEPDTCALAPYLDLLNHSPH
Sbjct: 181 QPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQRECLSAEPDTCALAPYLDLLNHSPH 240
Query: 241 VQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQRLFLEYGFVSVHNPHACVYVSR 300
VQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQRLFLEYGFVSVHNPHACVYVSR
Sbjct: 241 VQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQRLFLEYGFVSVHNPHACVYVSR 300
>gi|40068481 SET domain containing 3 isoform a [Homo sapiens]
Length = 594
Score = 71.2 bits (173), Expect = 2e-12
Identities = 96/431 (22%), Positives = 175/431 (40%), Gaps = 36/431 (8%)
Query: 10 RIRRRKLCGSSESRGVNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGRGLMSQTSLQ 69
+IR+++ S G E + F +L KW F G GL + ++
Sbjct: 59 KIRKKQKGLSVTFDGKREDY---FPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIK 115
Query: 70 EGQMIISLPESCLLTTDTVIRSYLGAYITKWKPPPSP-LLALCTFLVSEKHAGHRSLWKP 128
++ + +P L+T ++ S LG ++ + + +AL L+ E+ A S W+P
Sbjct: 116 AEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNIALAFHLLCER-ASPNSFWQP 174
Query: 129 YLEILPKAYTCPVCLEPEVVNLLPKSLKAKAE--EQRAHVQEFFASSRDFFSSLQPLFAE 186
Y++ LP Y P+ E + V L +S +A + Q + +A +
Sbjct: 175 YIQTLPSEYDTPLYFEEDEVRYL-QSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKL 233
Query: 187 AVDSIFSYSALLWAWCTVNTRAVYLRPRQRECLSAEPDTCALAPYLDLLNHSPHVQVKAA 246
+ F+Y WA +V T R Q T AL P D+ NH+ + +
Sbjct: 234 PLKDSFTYEDYRWAVSSVMT-----RQNQIPTEDGSRVTLALIPLWDMCNHTNGL-ITTG 287
Query: 247 FNEETHSYEIRTTSRWRKHEEVFICYGPHDNQRLFLEYGFVSVHNPHACVYVSREILVKY 306
+N E E +R E+++I YG N + GF +N H V + +
Sbjct: 288 YNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGV---- 343
Query: 307 LPSTDKQMDKKISILKDHGY----IENLTFGWDGPSWRLLTALKLLCLEAEKFTCWKKVL 362
+D+ K +L G + L F S +LL L++ C+ E+ K+ L
Sbjct: 344 -SKSDRLYAMKAEVLARAGIPTSSVFALHFTEPPISAQLLAFLRVFCMTEEEL---KEHL 399
Query: 363 LGE-------VISDTNEKTSLDIAQKICYYFIEETNAVLQKV--SHMKDEKEALINQLTL 413
LG+ + ++ S D K+ + F+E+ ++L K + ++++K L N
Sbjct: 400 LGDSAIDRIFTLGNSEFPVSWDNEVKL-WTFLEDRASLLLKTYKTTIEEDKSVLKNHDLS 458
Query: 414 VESLWTEELKI 424
V + +L++
Sbjct: 459 VRAKMAIKLRL 469
>gi|40068483 SET domain containing 3 isoform b [Homo sapiens]
Length = 296
Score = 47.8 bits (112), Expect = 2e-05
Identities = 54/232 (23%), Positives = 93/232 (40%), Gaps = 13/232 (5%)
Query: 10 RIRRRKLCGSSESRGVNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGRGLMSQTSLQ 69
+IR+++ S G E + F +L KW F G GL + ++
Sbjct: 59 KIRKKQKGLSVTFDGKREDY---FPDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIK 115
Query: 70 EGQMIISLPESCLLTTDTVIRSYLGAYITKWKPPPSP-LLALCTFLVSEKHAGHRSLWKP 128
++ + +P L+T ++ S LG ++ + + +AL L+ E+ A S W+P
Sbjct: 116 AEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNIALAFHLLCER-ASPNSFWQP 174
Query: 129 YLEILPKAYTCPVCLEPEVVNLLPKSLKAKAE--EQRAHVQEFFASSRDFFSSLQPLFAE 186
Y++ LP Y P+ E + V L +S +A + Q + +A +
Sbjct: 175 YIQTLPSEYDTPLYFEEDEVRYL-QSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKL 233
Query: 187 AVDSIFSYSALLWAWCTVNTRAVYLRPRQRECLSAEPDTCALAPYLDLLNHS 238
+ F+Y WA +V T R Q T AL P D+ NH+
Sbjct: 234 PLKDSFTYEDYRWAVSSVMT-----RQNQIPTEDGSRVTLALIPLWDMCNHT 280
>gi|238550107 SET domain containing 6 isoform a [Homo sapiens]
Length = 473
Score = 46.2 bits (108), Expect = 6e-05
Identities = 89/418 (21%), Positives = 163/418 (38%), Gaps = 64/418 (15%)
Query: 59 GRGLMSQTSLQEGQMIISLPESCLLTTDTVIRSYLGAYITKWK---PPPSPLLALCTFLV 115
G G++++ S+Q G+++ +P + LL+ T +G + + + S + L L+
Sbjct: 74 GYGMVARESVQAGELLFVVPRAALLSQHTCS---IGGLLERERVALQSQSGWVPLLLALL 130
Query: 116 SEKHAGHRSLWKPYLEILPKAYTC--PVCLEPE----------VVNLLPKSLKAKAEEQR 163
E A S W+PY + P+ P+ E V + K L E +
Sbjct: 131 HELQAP-ASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQ 189
Query: 164 AHVQEFFASSRDFFS----SLQPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQRECL 219
+ V F + D FS SL+ L+ + V + +YS + P + E
Sbjct: 190 SIVLPFMEAHPDLFSLRVRSLE-LYHQLVALVMAYS--------------FQEPLEEEED 234
Query: 220 SAEPDTCALAPYLDLLNHSPHVQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQR 279
EP++ + P D+LNH + ++ + + T K E+F YG N +
Sbjct: 235 EKEPNSPVMVPAADILNHLANHNANLEYS--ANCLRMVATQPIPKGHEIFNTYGQMANWQ 292
Query: 280 LFLEYGFVSVHNPHACVYVSREILV---KYLPSTDKQMDKKISILKDHGYIENLTFGWDG 336
L YGFV + + +++ L T + ++ + + + G +G
Sbjct: 293 LIHMYGFVEPYPDNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEG 352
Query: 337 ----------PSWRLLTALKLLCLEAEKFTCWKKVLLGEVISDTNEKTSLDIAQ----KI 382
L T LK+LC+ AE+F K G D E+ SL I K
Sbjct: 353 AFVIGREEVLTEEELTTTLKVLCMPAEEFRELKDQDGGG--DDKREEGSLTITNIPKLKA 410
Query: 383 CYYFIEETNAVLQKVSH---MKDEKEALINQLTLVESLWTEE--LKILRASAETLHSL 435
+ + + + +L ++ +K ++ L N+ + W E+ L++ LH L
Sbjct: 411 SWRQLLQNSVLLTLQTYATDLKTDQGLLSNKEVYAKLSWREQQALQVRYGQKMILHQL 468
>gi|238550105 SET domain containing 6 isoform b [Homo sapiens]
Length = 449
Score = 46.2 bits (108), Expect = 6e-05
Identities = 89/418 (21%), Positives = 163/418 (38%), Gaps = 64/418 (15%)
Query: 59 GRGLMSQTSLQEGQMIISLPESCLLTTDTVIRSYLGAYITKWK---PPPSPLLALCTFLV 115
G G++++ S+Q G+++ +P + LL+ T +G + + + S + L L+
Sbjct: 50 GYGMVARESVQAGELLFVVPRAALLSQHTCS---IGGLLERERVALQSQSGWVPLLLALL 106
Query: 116 SEKHAGHRSLWKPYLEILPKAYTC--PVCLEPE----------VVNLLPKSLKAKAEEQR 163
E A S W+PY + P+ P+ E V + K L E +
Sbjct: 107 HELQAP-ASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQ 165
Query: 164 AHVQEFFASSRDFFS----SLQPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQRECL 219
+ V F + D FS SL+ L+ + V + +YS + P + E
Sbjct: 166 SIVLPFMEAHPDLFSLRVRSLE-LYHQLVALVMAYS--------------FQEPLEEEED 210
Query: 220 SAEPDTCALAPYLDLLNHSPHVQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQR 279
EP++ + P D+LNH + ++ + + T K E+F YG N +
Sbjct: 211 EKEPNSPVMVPAADILNHLANHNANLEYS--ANCLRMVATQPIPKGHEIFNTYGQMANWQ 268
Query: 280 LFLEYGFVSVHNPHACVYVSREILV---KYLPSTDKQMDKKISILKDHGYIENLTFGWDG 336
L YGFV + + +++ L T + ++ + + + G +G
Sbjct: 269 LIHMYGFVEPYPDNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEG 328
Query: 337 ----------PSWRLLTALKLLCLEAEKFTCWKKVLLGEVISDTNEKTSLDIAQ----KI 382
L T LK+LC+ AE+F K G D E+ SL I K
Sbjct: 329 AFVIGREEVLTEEELTTTLKVLCMPAEEFRELKDQDGGG--DDKREEGSLTITNIPKLKA 386
Query: 383 CYYFIEETNAVLQKVSH---MKDEKEALINQLTLVESLWTEE--LKILRASAETLHSL 435
+ + + + +L ++ +K ++ L N+ + W E+ L++ LH L
Sbjct: 387 SWRQLLQNSVLLTLQTYATDLKTDQGLLSNKEVYAKLSWREQQALQVRYGQKMILHQL 444
>gi|156616308 SET and MYND domain containing 4 [Homo sapiens]
Length = 804
Score = 36.2 bits (82), Expect = 0.061
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 230 PYLDLLNHSPHVQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQ 278
P + LLNHS +F + IR + R RK +E+ CYGPH ++
Sbjct: 533 PVISLLNHSCSPNTSVSFISTVAT--IRASQRIRKGQEILHCYGPHKSR 579
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 31.2 bits (69), Expect = 2.0
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 396 KVSHMKDEKEALINQLTLVESLWTEELKILRASAE--------TLHSLQTA 438
++S DEKEALI+QLT + +T++L+ L+ E H+LQ+A
Sbjct: 1286 ELSRQLDEKEALISQLTRGKLTYTQQLEDLKRQLEEEVKAKNALAHALQSA 1336
>gi|239753559 PREDICTED: hypothetical protein XP_002345696 [Homo
sapiens]
Length = 366
Score = 30.8 bits (68), Expect = 2.6
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 103 PPSPLLALCTFLVSEKHAGHRSLWKPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAEEQ 162
P SP+ A V + H G + + + CP CLEP + LP+ ++
Sbjct: 126 PASPVTAFAANYVDKVHVGEHCVAIHHTQAPSGPQDCPQCLEPSISWRLPRLVR------ 179
Query: 163 RAHVQEFFA 171
H+QE A
Sbjct: 180 --HLQEVCA 186
>gi|239748103 PREDICTED: hypothetical protein [Homo sapiens]
Length = 366
Score = 30.8 bits (68), Expect = 2.6
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 103 PPSPLLALCTFLVSEKHAGHRSLWKPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAEEQ 162
P SP+ A V + H G + + + CP CLEP + LP+ ++
Sbjct: 126 PASPVTAFAANYVDKVHVGEHCVAIHHTQAPSGPQDCPQCLEPSISWRLPRLVR------ 179
Query: 163 RAHVQEFFA 171
H+QE A
Sbjct: 180 --HLQEVCA 186
>gi|239741999 PREDICTED: hypothetical protein XP_002342370 [Homo
sapiens]
Length = 366
Score = 30.8 bits (68), Expect = 2.6
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 103 PPSPLLALCTFLVSEKHAGHRSLWKPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAEEQ 162
P SP+ A V + H G + + + CP CLEP + LP+ ++
Sbjct: 126 PASPVTAFAANYVDKVHVGEHCVAIHHTQAPSGPQDCPQCLEPSISWRLPRLVR------ 179
Query: 163 RAHVQEFFA 171
H+QE A
Sbjct: 180 --HLQEVCA 186
>gi|15619015 protein kinase, cAMP-dependent, catalytic, gamma [Homo
sapiens]
Length = 351
Score = 30.4 bits (67), Expect = 3.3
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 292 PHACVYVSREIL-VKYLPSTD---KQMDKKISILKDHGYIENLTFGW----DGPSWRL 341
PHAC Y ++ +L V+YL S D + + + ++ GY++ FG+ G +W L
Sbjct: 142 PHACFYAAQVVLAVQYLHSLDLIHRDLKPENLLIDQQGYLQVTDFGFAKRVKGRTWTL 199
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 396 KVSHMKDEKEALINQLTLVESLWTEELKILRASAE 430
++SH +EKE+LI+QLT + T++L+ L+ E
Sbjct: 1290 ELSHRVEEKESLISQLTKSKQALTQQLEELKRQME 1324
>gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens]
Length = 1946
Score = 30.0 bits (66), Expect = 4.4
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 402 DEKEALINQLTLVESLWTEELKILRASAETLHSLQTA 438
+EKEALINQL+ +S +T +++ LR E Q+A
Sbjct: 1304 EEKEALINQLSREKSNFTRQIEDLRGQLEKETKSQSA 1340
>gi|217272890 palmitoyl-protein thioesterase 1 isoform 2 precursor
[Homo sapiens]
Length = 203
Score = 29.3 bits (64), Expect = 7.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 16 LCGSSESRGVNESHKSEFIELRKWLKARKFQDSNLAP 52
L ++ RG+NES+K + L+K++ + DS + P
Sbjct: 99 LADINQERGINESYKKNLMALKKFVMVKFLNDSIVDP 135
>gi|4506031 palmitoyl-protein thioesterase 1 isoform 1 precursor
[Homo sapiens]
Length = 306
Score = 29.3 bits (64), Expect = 7.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 16 LCGSSESRGVNESHKSEFIELRKWLKARKFQDSNLAP 52
L ++ RG+NES+K + L+K++ + DS + P
Sbjct: 202 LADINQERGINESYKKNLMALKKFVMVKFLNDSIVDP 238
>gi|157785656 nudix motif 7 [Homo sapiens]
Length = 238
Score = 29.3 bits (64), Expect = 7.4
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 21/90 (23%)
Query: 54 CFPGTGRGLMSQ----TSLQEGQMIISLPES----------CLLTTDTVIRSYLGAYITK 99
CFPG R T+L+E Q + L CL+ TDT+I ++G
Sbjct: 72 CFPGGKRDPTDMDDAATALREAQEEVGLRPHQVEVVCCLVPCLIDTDTLITPFVGLIDHN 131
Query: 100 WKPPPSP-------LLALCTFLVSEKHAGH 122
++ P+P L+ L FL + H H
Sbjct: 132 FQAQPNPAEVKDVFLVPLAYFLHPQVHDQH 161
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,182,135
Number of Sequences: 37866
Number of extensions: 753190
Number of successful extensions: 2031
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2013
Number of HSP's gapped (non-prelim): 19
length of query: 440
length of database: 18,247,518
effective HSP length: 105
effective length of query: 335
effective length of database: 14,271,588
effective search space: 4780981980
effective search space used: 4780981980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.