Search of human proteins with 78217388

Search of human proteins with 78217388

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|78217388 RAB GTPase activating protein 1-like isoform B
[Homo sapiens]
         (72 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|78217388 RAB GTPase activating protein 1-like isoform B [Homo...   145   5e-36
gi|78217386 RAB GTPase activating protein 1-like isoform A [Homo...    75   8e-15
gi|164519084 RAB GTPase activating protein 1 [Homo sapiens]            50   4e-07
gi|68299759 ecotropic viral integration site 5 [Homo sapiens]          28   1.2  
gi|229577000 ecotropic viral integration site 5-like isoform 1 [...    27   3.4  
gi|21687020 ecotropic viral integration site 5-like isoform 2 [H...    27   3.4  
gi|4885583 Rho-associated, coiled-coil containing protein kinase...    27   4.5  

>gi|78217388 RAB GTPase activating protein 1-like isoform B [Homo
          sapiens]
          Length = 72

 Score =  145 bits (367), Expect = 5e-36
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1  MMEEISIMVAYDAHVFSQLHDEDFLTSLVAISKPRSMVPTKKLKKYEKEYQTMRESQLQQ 60
          MMEEISIMVAYDAHVFSQLHDEDFLTSLVAISKPRSMVPTKKLKKYEKEYQTMRESQLQQ
Sbjct: 1  MMEEISIMVAYDAHVFSQLHDEDFLTSLVAISKPRSMVPTKKLKKYEKEYQTMRESQLQQ 60

Query: 61 EDPMDRYKFVYL 72
          EDPMDRYKFVYL
Sbjct: 61 EDPMDRYKFVYL 72


>gi|78217386 RAB GTPase activating protein 1-like isoform A [Homo
           sapiens]
          Length = 815

 Score = 75.5 bits (184), Expect = 8e-15
 Identities = 35/35 (100%), Positives = 35/35 (100%)

Query: 38  VPTKKLKKYEKEYQTMRESQLQQEDPMDRYKFVYL 72
           VPTKKLKKYEKEYQTMRESQLQQEDPMDRYKFVYL
Sbjct: 781 VPTKKLKKYEKEYQTMRESQLQQEDPMDRYKFVYL 815


>gi|164519084 RAB GTPase activating protein 1 [Homo sapiens]
          Length = 1069

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 21/31 (67%), Positives = 26/31 (83%)

Query: 38  VPTKKLKKYEKEYQTMRESQLQQEDPMDRYK 68
           +  KKLKKYEKEY TMRE Q QQEDP++R++
Sbjct: 809 ISQKKLKKYEKEYHTMREQQAQQEDPIERFE 839


>gi|68299759 ecotropic viral integration site 5 [Homo sapiens]
          Length = 810

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 10/29 (34%), Positives = 21/29 (72%)

Query: 40  TKKLKKYEKEYQTMRESQLQQEDPMDRYK 68
           +KK+KK EKEY T++  +++++  + R +
Sbjct: 405 SKKMKKLEKEYTTIKTKEMEEQVEIKRLR 433


>gi|229577000 ecotropic viral integration site 5-like isoform 1
           [Homo sapiens]
          Length = 805

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)

Query: 41  KKLKKYEKEYQTMRESQLQQEDPMDRYK 68
           KK+K+ EKEY  M+  +++++  + R +
Sbjct: 358 KKMKRLEKEYAAMKSKEMEEQIEIKRLR 385


>gi|21687020 ecotropic viral integration site 5-like isoform 2 [Homo
           sapiens]
          Length = 794

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)

Query: 41  KKLKKYEKEYQTMRESQLQQEDPMDRYK 68
           KK+K+ EKEY  M+  +++++  + R +
Sbjct: 358 KKMKRLEKEYAAMKSKEMEEQIEIKRLR 385


>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
           [Homo sapiens]
          Length = 1354

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 14  HVFSQLHDED-FLTSLVAISKPRSMVPTKKLKKYEKEYQTMRESQL 58
           H  S+L + +  LT  + I +  +   T+K+KK E+EY+  +E ++
Sbjct: 936 HTVSRLEEANSMLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEI 981


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.131    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,344,676
Number of Sequences: 37866
Number of extensions: 74372
Number of successful extensions: 409
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 9
length of query: 72
length of database: 18,247,518
effective HSP length: 45
effective length of query: 27
effective length of database: 16,543,548
effective search space: 446675796
effective search space used: 446675796
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.