Search of human proteins with 7656926

Search of human proteins with 7656926

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7656926 trafficking protein particle complex 3 [Homo
sapiens]
         (180 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7656926 trafficking protein particle complex 3 [Homo sapiens]      360   e-100
gi|212720946 BET3 like [Homo sapiens]                                 223   5e-59
gi|118600991 trafficking protein particle complex 6B isoform 1 [...    28   3.3  
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...    28   4.3  
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...    28   4.3  
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    28   4.3  
gi|28976154 trafficking protein particle complex 6B isoform 2 [H...    28   5.6  
gi|57242774 hypothetical protein LOC9703 [Homo sapiens]                27   9.5  
gi|109689695 transient receptor potential cation channel, subfam...    27   9.5  
gi|148839372 thioredoxin domain containing 3 [Homo sapiens]            27   9.5  

>gi|7656926 trafficking protein particle complex 3 [Homo sapiens]
          Length = 180

 Score =  360 bits (923), Expect = e-100
 Identities = 180/180 (100%), Positives = 180/180 (100%)

Query: 1   MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFL 60
           MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFL
Sbjct: 1   MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFL 60

Query: 61  ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 120
           ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD
Sbjct: 61  ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPD 120

Query: 121 NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180
           NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE
Sbjct: 121 NHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGEE 180


>gi|212720946 BET3 like [Homo sapiens]
          Length = 181

 Score =  223 bits (569), Expect = 5e-59
 Identities = 112/181 (61%), Positives = 140/181 (77%), Gaps = 1/181 (0%)

Query: 1   MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFL 60
           MSR A+R  E  K++ +LF LTYGALV QLCKDYE DEDVN+ LDKMG+ IG RL+EDFL
Sbjct: 1   MSRPAHRRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFL 60

Query: 61  ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFV-ELP 119
           ARS VGRCH + E  D+IA+VAFKMYLGITPS+T  + + +EFSLILE NPLV+FV ELP
Sbjct: 61  ARSCVGRCHSYSEIIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELP 120

Query: 120 DNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGE 179
              SSL Y NLLCG++RGALEMV +A +  F+QD LKGD VTEI + F+++ ++    G+
Sbjct: 121 AGRSSLCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKRDEKKYRGK 180

Query: 180 E 180
           +
Sbjct: 181 K 181


>gi|118600991 trafficking protein particle complex 6B isoform 1
           [Homo sapiens]
          Length = 158

 Score = 28.5 bits (62), Expect = 3.3
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 13/130 (10%)

Query: 18  LFTLTYGALVTQLCKDYENDEDVN----KQLDKMGFNIGVRLIEDFLARSNVGRCHDFRE 73
           LF L +  +V+ + K  E  E  N     +L+ MGF +G  LIE F    +  R   F++
Sbjct: 6   LFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERF--TKDTAR---FKD 60

Query: 74  TADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSN---- 129
             D++  +    +  +     +      +   +L++N      ++      L +++    
Sbjct: 61  ELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLA 120

Query: 130 LLCGVLRGAL 139
             CG++RG L
Sbjct: 121 FTCGLIRGGL 130


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 34  YENDEDVNKQLDKM-GFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPS 92
           YE  ED NK +++M G  I  ++I    A+  V R  + +   + + +     Y G+   
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLY 297

Query: 93  ITNWSPAGDEFSLILENNP 111
           I N     D+  L  E +P
Sbjct: 298 IKNLDDTIDDEKLRKEFSP 316


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 34  YENDEDVNKQLDKM-GFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPS 92
           YE  ED NK +++M G  I  ++I    A+  V R  + +   + + +     Y G+   
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLY 297

Query: 93  ITNWSPAGDEFSLILENNP 111
           I N     D+  L  E +P
Sbjct: 298 IKNLDDTIDDEKLRKEFSP 316


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 34  YENDEDVNKQLDKM-GFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPS 92
           YE  ED NK +++M G  I  ++I    A+  V R  + +   + + +     Y G+   
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLY 297

Query: 93  ITNWSPAGDEFSLILENNP 111
           I N     D+  L  E +P
Sbjct: 298 IKNLDDTIDDEKLRKEFSP 316


>gi|28976154 trafficking protein particle complex 6B isoform 2
          [Homo sapiens]
          Length = 130

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 18 LFTLTYGALVTQLCKDYENDEDVN----KQLDKMGFNIGVRLIEDF 59
          LF L +  +V+ + K  E  E  N     +L+ MGF +G  LIE F
Sbjct: 6  LFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERF 51


>gi|57242774 hypothetical protein LOC9703 [Homo sapiens]
          Length = 2235

 Score = 26.9 bits (58), Expect = 9.5
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 36   NDEDVNKQLDKMGFNIGVRLIEDF-LARSNVGRCHDFRETADVIAKVAF 83
            N E  N QL+    NI +R  +DF L R+N       +E   V+ +  F
Sbjct: 1863 NQEKANLQLESEELNILIRCFKDFQLQRANKMELRKQQEDVSVVRRTEF 1911


>gi|109689695 transient receptor potential cation channel, subfamily
           M, member 8 [Homo sapiens]
          Length = 1104

 Score = 26.9 bits (58), Expect = 9.5
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 126 IYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGE 179
           I + + C V+ G+ ++  +      V+D L    V E  +RF+ R    LP  E
Sbjct: 320 IKNKIPCVVVEGSGQIADVIASLVEVEDALTSSAVKEKLVRFLPRTVSRLPEEE 373


>gi|148839372 thioredoxin domain containing 3 [Homo sapiens]
          Length = 588

 Score = 26.9 bits (58), Expect = 9.5
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 30  LCKDYENDEDVNKQLDKM--GFNIGVRLIED 58
           LCK+YEN++  NK ++ M  G ++ + L+ D
Sbjct: 361 LCKEYENEDYFNKLIENMTSGPSLALVLLRD 391


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,916,577
Number of Sequences: 37866
Number of extensions: 220407
Number of successful extensions: 464
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 10
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.