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Search of human proteins with 73622130
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|73622130 BolA-like protein 2 [Homo sapiens]
(152 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|73622130 BolA-like protein 2 [Homo sapiens] 301 1e-82
gi|85797673 bolA-like protein 2B [Homo sapiens] 301 1e-82
gi|7705638 bolA-like 1 [Homo sapiens] 56 1e-08
gi|78486586 bolA-like 3 isoform 1 [Homo sapiens] 37 0.005
gi|46255052 DNA ligase IV [Homo sapiens] 29 1.8
gi|23199993 DNA ligase IV [Homo sapiens] 29 1.8
gi|148539894 DNA ligase IV [Homo sapiens] 29 1.8
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 27 5.1
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 27 5.1
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 27 5.1
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 27 5.1
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 27 5.1
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 27 5.1
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 27 5.1
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 27 5.1
gi|112420960 hypothetical protein LOC374467 [Homo sapiens] 27 5.1
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 27 8.8
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 27 8.8
gi|119964721 fer (fps/fes related) tyrosine kinase [Homo sapiens] 27 8.8
>gi|73622130 BolA-like protein 2 [Homo sapiens]
Length = 152
Score = 301 bits (772), Expect = 1e-82
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MASAKSLDRWKARLLEGGSTALTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLGCR 60
MASAKSLDRWKARLLEGGSTALTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLGCR
Sbjct: 1 MASAKSLDRWKARLLEGGSTALTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLGCR 60
Query: 61 SSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR 120
SSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR
Sbjct: 61 SSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR 120
Query: 121 LVNACLAEELPHIHAFEQKTLTPDQWARERQK 152
LVNACLAEELPHIHAFEQKTLTPDQWARERQK
Sbjct: 121 LVNACLAEELPHIHAFEQKTLTPDQWARERQK 152
>gi|85797673 bolA-like protein 2B [Homo sapiens]
Length = 152
Score = 301 bits (772), Expect = 1e-82
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MASAKSLDRWKARLLEGGSTALTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLGCR 60
MASAKSLDRWKARLLEGGSTALTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLGCR
Sbjct: 1 MASAKSLDRWKARLLEGGSTALTYALVRAEVSFPAEVAPVRQQGSVAGARAGVVSLLGCR 60
Query: 61 SSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR 120
SSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR
Sbjct: 61 SSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR 120
Query: 121 LVNACLAEELPHIHAFEQKTLTPDQWARERQK 152
LVNACLAEELPHIHAFEQKTLTPDQWARERQK
Sbjct: 121 LVNACLAEELPHIHAFEQKTLTPDQWARERQK 152
>gi|7705638 bolA-like 1 [Homo sapiens]
Length = 137
Score = 56.2 bits (134), Expect = 1e-08
Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 52 GVVSLLG----CR-SSWTAAMELSAEYLREKLQRDLEAEHVEVEDTTLNRC-----SCSF 101
G+VS+ G C+ S+ + A+ +R KL+ L E +E+ + + F
Sbjct: 9 GLVSMAGRVCLCQGSAGSGAIGPVEAAIRTKLEEALSPEVLELRNESGGHAVPPGSETHF 68
Query: 102 RVLVVSAKFEGKPLLQRHRLVNACLAEEL-PHIHAFEQKTLTPDQWARERQ 151
RV VVS++FEG LQRHRLV+A LAEEL +HA + TP QW Q
Sbjct: 69 RVAVVSSRFEGLSPLQRHRLVHAALAEELGGPVHALAIQARTPAQWRENSQ 119
>gi|78486586 bolA-like 3 isoform 1 [Homo sapiens]
Length = 107
Score = 37.4 bits (85), Expect = 0.005
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 72 EYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHRLVNACLAEELP 131
+ L+EK R A ++V D + C + + + S +F+ K +Q+H++VN L EE+
Sbjct: 38 QILKEKFPR---ATAIKVTDIS-GGCGAMYEIKIESEEFKEKRTVQQHQMVNQALKEEIK 93
Query: 132 HIHAFEQKTLTP 143
+H T P
Sbjct: 94 EMHGLRIFTSVP 105
>gi|46255052 DNA ligase IV [Homo sapiens]
Length = 911
Score = 28.9 bits (63), Expect = 1.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 89 VEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHRLVNACLAEELPHIHAFEQKT 140
VED+ L C C F VL+V+ K G L++ + + + +P QKT
Sbjct: 355 VEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQKT 406
>gi|23199993 DNA ligase IV [Homo sapiens]
Length = 911
Score = 28.9 bits (63), Expect = 1.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 89 VEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHRLVNACLAEELPHIHAFEQKT 140
VED+ L C C F VL+V+ K G L++ + + + +P QKT
Sbjct: 355 VEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQKT 406
>gi|148539894 DNA ligase IV [Homo sapiens]
Length = 911
Score = 28.9 bits (63), Expect = 1.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 89 VEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHRLVNACLAEELPHIHAFEQKT 140
VED+ L C C F VL+V+ K G L++ + + + +P QKT
Sbjct: 355 VEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQKT 406
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 27.3 bits (59), Expect = 5.1
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 65 AAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFE----GKPLLQ--- 117
A +E LR+ +LE + VEDT R +L + A FE GK L+
Sbjct: 1889 ADIEERLAQLRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELEL 1948
Query: 118 ---RHRLVNACLAEELPHIHAFEQKTLTPDQWARERQ 151
R + ++E + A Q+ L ++ R R+
Sbjct: 1949 GRIRSNAEDTLRSKEQAELEAARQRQLAAEEERRRRE 1985
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 27.3 bits (59), Expect = 5.1
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 65 AAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFE----GKPLLQ--- 117
A +E LR+ +LE + VEDT R +L + A FE GK L+
Sbjct: 1893 ADIEERLAQLRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELEL 1952
Query: 118 ---RHRLVNACLAEELPHIHAFEQKTLTPDQWARERQ 151
R + ++E + A Q+ L ++ R R+
Sbjct: 1953 GRIRSNAEDTLRSKEQAELEAARQRQLAAEEERRRRE 1989
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 27.3 bits (59), Expect = 5.1
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 65 AAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFE----GKPLLQ--- 117
A +E LR+ +LE + VEDT R +L + A FE GK L+
Sbjct: 1889 ADIEERLAQLRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELEL 1948
Query: 118 ---RHRLVNACLAEELPHIHAFEQKTLTPDQWARERQ 151
R + ++E + A Q+ L ++ R R+
Sbjct: 1949 GRIRSNAEDTLRSKEQAELEAARQRQLAAEEERRRRE 1985
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 27.3 bits (59), Expect = 5.1
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 65 AAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFE----GKPLLQ--- 117
A +E LR+ +LE + VEDT R +L + A FE GK L+
Sbjct: 1857 ADIEERLAQLRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELEL 1916
Query: 118 ---RHRLVNACLAEELPHIHAFEQKTLTPDQWARERQ 151
R + ++E + A Q+ L ++ R R+
Sbjct: 1917 GRIRSNAEDTLRSKEQAELEAARQRQLAAEEERRRRE 1953
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 27.3 bits (59), Expect = 5.1
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 65 AAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFE----GKPLLQ--- 117
A +E LR+ +LE + VEDT R +L + A FE GK L+
Sbjct: 2026 ADIEERLAQLRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELEL 2085
Query: 118 ---RHRLVNACLAEELPHIHAFEQKTLTPDQWARERQ 151
R + ++E + A Q+ L ++ R R+
Sbjct: 2086 GRIRSNAEDTLRSKEQAELEAARQRQLAAEEERRRRE 2122
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 27.3 bits (59), Expect = 5.1
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 65 AAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFE----GKPLLQ--- 117
A +E LR+ +LE + VEDT R +L + A FE GK L+
Sbjct: 1867 ADIEERLAQLRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELEL 1926
Query: 118 ---RHRLVNACLAEELPHIHAFEQKTLTPDQWARERQ 151
R + ++E + A Q+ L ++ R R+
Sbjct: 1927 GRIRSNAEDTLRSKEQAELEAARQRQLAAEEERRRRE 1963
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 27.3 bits (59), Expect = 5.1
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 65 AAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFE----GKPLLQ--- 117
A +E LR+ +LE + VEDT R +L + A FE GK L+
Sbjct: 1875 ADIEERLAQLRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELEL 1934
Query: 118 ---RHRLVNACLAEELPHIHAFEQKTLTPDQWARERQ 151
R + ++E + A Q+ L ++ R R+
Sbjct: 1935 GRIRSNAEDTLRSKEQAELEAARQRQLAAEEERRRRE 1971
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 27.3 bits (59), Expect = 5.1
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 65 AAMELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFE----GKPLLQ--- 117
A +E LR+ +LE + VEDT R +L + A FE GK L+
Sbjct: 1916 ADIEERLAQLRKASDSELERQKGLVEDTLRQRRQVEEEILALKASFEKAAAGKAELELEL 1975
Query: 118 ---RHRLVNACLAEELPHIHAFEQKTLTPDQWARERQ 151
R + ++E + A Q+ L ++ R R+
Sbjct: 1976 GRIRSNAEDTLRSKEQAELEAARQRQLAAEEERRRRE 2012
>gi|112420960 hypothetical protein LOC374467 [Homo sapiens]
Length = 1197
Score = 27.3 bits (59), Expect = 5.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 88 EVEDTTLNRCSCSFRVLVVSAKFE-GKPLLQRHR 120
EVE TL++CS +VV A+ + LQRHR
Sbjct: 710 EVEQKTLSQCSAGELEIVVEARLQLAAVALQRHR 743
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 26.6 bits (57), Expect = 8.8
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 75 REKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR 120
REKL+ E +E+ED + +C + ++++ + +PL+Q HR
Sbjct: 1476 REKLR-----EVIEIEDASPTKCPITTKLVLDEDEETKEPLVQVHR 1516
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 26.6 bits (57), Expect = 8.8
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 75 REKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHR 120
REKL+ E +E+ED + +C + ++++ + +PL+Q HR
Sbjct: 1514 REKLR-----EVIEIEDASPTKCPITTKLVLDEDEETKEPLVQVHR 1554
>gi|119964721 fer (fps/fes related) tyrosine kinase [Homo sapiens]
Length = 822
Score = 26.6 bits (57), Expect = 8.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 78 LQRDLEAEHVEVEDTTLNRCSCSFRVLV 105
+ + +EAE ++V T L + CS+R L+
Sbjct: 117 VHQQIEAEMIKVTKTELEKLKCSYRQLI 144
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.129 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,317,770
Number of Sequences: 37866
Number of extensions: 191227
Number of successful extensions: 633
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 19
length of query: 152
length of database: 18,247,518
effective HSP length: 93
effective length of query: 59
effective length of database: 14,725,980
effective search space: 868832820
effective search space used: 868832820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.