Search of human proteins with 71274164

Search of human proteins with 71274164

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|71274164 RAB15 effector protein [Homo sapiens]
         (236 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|71274164 RAB15 effector protein [Homo sapiens]                     482   e-136
gi|122937388 MAX gene associated [Homo sapiens]                        38   0.009
gi|62460637 importin 4 [Homo sapiens]                                  32   0.62 
gi|189083849 delta-aminolevulinic acid dehydratase [Homo sapiens]      31   0.81 
gi|90265805 phospholipase C, delta 1 isoform 2 [Homo sapiens]          30   2.4  
gi|195972883 phospholipase C, delta 1 isoform 1 [Homo sapiens]         30   2.4  
gi|19923812 oxysterol-binding protein-like protein 10 [Homo sapi...    30   2.4  
gi|169215453 PREDICTED: hypothetical protein [Homo sapiens]            28   6.9  
gi|169215350 PREDICTED: hypothetical protein [Homo sapiens]            28   9.0  
gi|27501458 CTF18, chromosome transmission fidelity factor 18 ho...    28   9.0  

>gi|71274164 RAB15 effector protein [Homo sapiens]
          Length = 236

 Score =  482 bits (1240), Expect = e-136
 Identities = 236/236 (100%), Positives = 236/236 (100%)

Query: 1   MGQKASQQLALKDSKEVPVVCEVVSEAIVHAAQKLKEYLGFEYPPSKLCPAANTLNEIFL 60
           MGQKASQQLALKDSKEVPVVCEVVSEAIVHAAQKLKEYLGFEYPPSKLCPAANTLNEIFL
Sbjct: 1   MGQKASQQLALKDSKEVPVVCEVVSEAIVHAAQKLKEYLGFEYPPSKLCPAANTLNEIFL 60

Query: 61  IHFITFCQEKGVDEWLTTTKMTKHQAFLFGADWIWTFWGSNKQIKLQLAVQTLQMSSPPP 120
           IHFITFCQEKGVDEWLTTTKMTKHQAFLFGADWIWTFWGSNKQIKLQLAVQTLQMSSPPP
Sbjct: 61  IHFITFCQEKGVDEWLTTTKMTKHQAFLFGADWIWTFWGSNKQIKLQLAVQTLQMSSPPP 120

Query: 121 VESKPCDLSNPESRVEESSWKKSRFDKLEEFCNLIGEDCLGLFIIFGMPGKPKDIRGVVL 180
           VESKPCDLSNPESRVEESSWKKSRFDKLEEFCNLIGEDCLGLFIIFGMPGKPKDIRGVVL
Sbjct: 121 VESKPCDLSNPESRVEESSWKKSRFDKLEEFCNLIGEDCLGLFIIFGMPGKPKDIRGVVL 180

Query: 181 DSVKSQMVRSHLPGGKAVAQFVLETEDCVFIKELLRNCLSKKDGLREVGKVYISIL 236
           DSVKSQMVRSHLPGGKAVAQFVLETEDCVFIKELLRNCLSKKDGLREVGKVYISIL
Sbjct: 181 DSVKSQMVRSHLPGGKAVAQFVLETEDCVFIKELLRNCLSKKDGLREVGKVYISIL 236


>gi|122937388 MAX gene associated [Homo sapiens]
          Length = 3114

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 20/100 (20%)

Query: 116  SSPPPVESKPCDLSNPESRVEESSWKKSRFDKLEEFCNLIGEDCLGLFIIFGMPGKPKDI 175
            S   P++   CDL +   +++E SWK S        CN  GE     ++    PG P  +
Sbjct: 1285 SEQQPLKQLTCDLEDDSDKLQEKSWKSS--------CN-EGESSSTSYMHQRSPGGPTKL 1335

Query: 176  RGVVLD-----------SVKSQMVRSHLPGGKAVAQFVLE 204
              ++ D           S+ SQ + S++P    V  F++E
Sbjct: 1336 IEIISDCNWEEDRNKILSILSQHINSNMPQSLKVGSFIIE 1375


>gi|62460637 importin 4 [Homo sapiens]
          Length = 1081

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 12  KDSKEVPVVCEVVSEAIVHAAQKLKEYLGFEYPPSKLCP 50
           +DS+E  +  E++ E   H A ++ + L    PP KLCP
Sbjct: 313 QDSEEEELEIELMGETPKHFAVQVVDMLALHLPPEKLCP 351


>gi|189083849 delta-aminolevulinic acid dehydratase [Homo sapiens]
          Length = 330

 Score = 31.2 bits (69), Expect = 0.81
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 147 KLEEFCNLIGEDCLGLFIIFGMPGK-PKDIRGVVLDSVKSQMVRS 190
           +LEE    + E+ L   +IFG+P + PKD RG   DS +S  + +
Sbjct: 60  RLEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEA 104


>gi|90265805 phospholipase C, delta 1 isoform 2 [Homo sapiens]
          Length = 756

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 134 RVEESSWKKSRFDKLEEFCNLIGED 158
           +V+ SSW++ RF KL+E C  I ++
Sbjct: 30  KVKSSSWRRERFYKLQEDCKTIWQE 54


>gi|195972883 phospholipase C, delta 1 isoform 1 [Homo sapiens]
          Length = 777

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 134 RVEESSWKKSRFDKLEEFCNLIGED 158
           +V+ SSW++ RF KL+E C  I ++
Sbjct: 51  KVKSSSWRRERFYKLQEDCKTIWQE 75


>gi|19923812 oxysterol-binding protein-like protein 10 [Homo
           sapiens]
          Length = 764

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 101 NKQIKLQLAVQTLQMSSPPPVESKPCDLSNPESRVEESSWKKSRFDKLEEFCNLIGEDCL 160
           +K  KL+   +  Q+S  PP+    C+       V    W KS+F  +    ++IGE  L
Sbjct: 521 SKSYKLRFVAE--QVSHHPPISCFYCECEEKRLCVNTHVWTKSKFMGMSVGVSMIGEGVL 578

Query: 161 GL 162
            L
Sbjct: 579 RL 580


>gi|169215453 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 707

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 115 MSSPPPVESKPCDLSNPESRVE 136
           +SSPPP    PC +S+P  RV+
Sbjct: 497 VSSPPPRVQPPCHVSSPPPRVQ 518


>gi|169215350 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 707

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 115 MSSPPPVESKPCDLSNPESRVE 136
           +SSPPP    PC +S+P  RV+
Sbjct: 497 VSSPPPRVQPPCRVSSPPPRVQ 518


>gi|27501458 CTF18, chromosome transmission fidelity factor 18
           homolog [Homo sapiens]
          Length = 975

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 103 QIKLQLAVQTLQMSSPPPVESKPCDLSNPES 133
           Q+  +L  ++ +M  PPP +S P D++ P S
Sbjct: 105 QVVKRLNFRSEEMEEPPPPDSSPTDITPPPS 135


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,425,482
Number of Sequences: 37866
Number of extensions: 401099
Number of successful extensions: 1015
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 14
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.