Guide to the Human Genome
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Name: GNLY Sequence: fasta or formatted (145aa) NCBI GI: 7108344
Description:

granulysin isoform NKG5

Referenced in:

Additional Host Defense Functions

Other entries for this name:
alt prot [130aa] granulysin isoform 519
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         11           2
 C cysteine            4.8          7           1
 D aspartate           4.8          7           1
 E glutamate           4.8          7           2
 F phenylalanine       1.4          2           1
 G glycine             6.2          9           1
 H histidine           0.7          1           1
 I isoleucine          2.1          3           1
 K lysine              4.1          6           2
 L leucine            13.8         20           4
 M methionine          2.8          4           1
 N asparagine          2.1          3           1
 P proline             4.8          7           1
 Q glutamine           6.2          9           2
 R arginine           11.0         16           2
 S serine              5.5          8           1
 T threonine           7.6         11           1
 V valine              5.5          8           1
 W tryptophan          1.4          2           1
 Y tyrosine            2.8          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   granulysin isoform NKG5 
GNLY                  0.882   granulysin isoform 519 
PSAPL1                0.033   prosaposin-like protein 1 
PSAP                  0.018   prosaposin isoform c preproprotein 
PSAP                  0.018   prosaposin isoform b preproprotein 
PSAP                  0.018   prosaposin isoform a preproprotein 
LOC100292193          0.015   PREDICTED: hypothetical protein 
SP110                 0.011   SP110 nuclear body protein isoform a 
SP110                 0.011   SP110 nuclear body protein isoform b 
SP110                 0.011   SP110 nuclear body protein isoform c 
CD93                  0.011   CD93 antigen precursor 
C2CD3                 0.007   C2 calcium-dependent domain containing 3 
NCOA2                 0.007   nuclear receptor coactivator 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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