Search of human proteins with 70906444

Search of human proteins with 70906444

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|70906444 deoxyuridine triphosphatase isoform 3 [Homo
sapiens]
         (141 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|70906444 deoxyuridine triphosphatase isoform 3 [Homo sapiens]      286   5e-78
gi|4503423 deoxyuridine triphosphatase isoform 2 [Homo sapiens]       286   5e-78
gi|70906441 deoxyuridine triphosphatase isoform 1 precursor [Hom...   286   5e-78
gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]            29   1.1  
gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]            29   1.1  
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]            29   1.1  
gi|113430175 PREDICTED: hypothetical protein [Homo sapiens]            29   1.1  
gi|66392190 transmembrane protein 41B [Homo sapiens]                   27   7.3  
gi|5454014 tripartite motif-containing 38 [Homo sapiens]               26   9.5  

>gi|70906444 deoxyuridine triphosphatase isoform 3 [Homo sapiens]
          Length = 141

 Score =  286 bits (731), Expect = 5e-78
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA 60
           MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA
Sbjct: 1   MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA 60

Query: 61  PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE 120
           PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE
Sbjct: 61  PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE 120

Query: 121 EVQALDDTERGSGGFGSTGKN 141
           EVQALDDTERGSGGFGSTGKN
Sbjct: 121 EVQALDDTERGSGGFGSTGKN 141


>gi|4503423 deoxyuridine triphosphatase isoform 2 [Homo sapiens]
          Length = 164

 Score =  286 bits (731), Expect = 5e-78
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA 60
           MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA
Sbjct: 24  MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA 83

Query: 61  PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE 120
           PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE
Sbjct: 84  PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE 143

Query: 121 EVQALDDTERGSGGFGSTGKN 141
           EVQALDDTERGSGGFGSTGKN
Sbjct: 144 EVQALDDTERGSGGFGSTGKN 164


>gi|70906441 deoxyuridine triphosphatase isoform 1 precursor [Homo
           sapiens]
          Length = 252

 Score =  286 bits (731), Expect = 5e-78
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA 60
           MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA
Sbjct: 112 MQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVA 171

Query: 61  PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE 120
           PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE
Sbjct: 172 PRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIE 231

Query: 121 EVQALDDTERGSGGFGSTGKN 141
           EVQALDDTERGSGGFGSTGKN
Sbjct: 232 EVQALDDTERGSGGFGSTGKN 252


>gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 2061

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 5    FARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYG 57
            F+ +S +     RGS R +  D Y+A D + P + +A+ + D+QI  P   YG
Sbjct: 1834 FSLISHYREGLVRGSFRGSFLDYYAA-DISYP-IRRAIQEGDLQIDFPKVNYG 1884


>gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 2061

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 5    FARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYG 57
            F+ +S +     RGS R +  D Y+A D + P + +A+ + D+QI  P   YG
Sbjct: 1834 FSLISHYREGLVRGSFRGSFLDYYAA-DISYP-IRRAIQEGDLQIDFPKVNYG 1884


>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 2028

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 5    FARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYG 57
            F+ +S +     RGS R +  D Y+A D + P + +A+ + D+QI  P   YG
Sbjct: 1801 FSLISHYREGLVRGSFRGSFLDYYAA-DISYP-IRRAIQEGDLQIDFPKVNYG 1851


>gi|113430175 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1934

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 5    FARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYG 57
            F+ +S +     RGS R +  D Y+A D + P + +A+ + D+QI  P   YG
Sbjct: 1707 FSLISHYREGLVRGSFRGSFLDYYAA-DISYP-IRRAIQEGDLQIDFPKVNYG 1757


>gi|66392190 transmembrane protein 41B [Homo sapiens]
          Length = 291

 Score = 26.6 bits (57), Expect = 7.3
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 57  GRVAPRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGD-RIAQLICERIF 115
           GRVA RS L A H   VG G      RG       +  KEK  V+ G  R++ LI   IF
Sbjct: 4   GRVAERSQLGAHHTTPVGDGAAGT--RGLAAPGSRDHQKEKSWVEAGSARMSLLILVSIF 61


>gi|5454014 tripartite motif-containing 38 [Homo sapiens]
          Length = 465

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 70  FIDVGAGVIDEDYRGNVGVVLFNFGKEKF 98
           F+D  AGV+   Y GN G  +F F K  F
Sbjct: 415 FLDYEAGVVSF-YNGNTGCHIFTFPKASF 442


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,353,473
Number of Sequences: 37866
Number of extensions: 217780
Number of successful extensions: 374
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 9
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.