Guide to the Human Genome
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Name: TMEM41B Sequence: fasta or formatted (291aa) NCBI GI: 66392190
Description:

transmembrane protein 41B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         26           2
 C cysteine            1.0          3           1
 D aspartate           2.1          6           2
 E glutamate           3.8         11           3
 F phenylalanine       7.9         23           2
 G glycine             6.2         18           1
 H histidine           1.7          5           2
 I isoleucine          6.9         20           2
 K lysine              6.2         18           2
 L leucine            12.0         35           2
 M methionine          2.4          7           1
 N asparagine          2.4          7           1
 P proline             5.2         15           2
 Q glutamine           3.4         10           2
 R arginine            3.8         11           1
 S serine              7.2         21           1
 T threonine           4.8         14           2
 V valine              8.6         25           2
 W tryptophan          1.4          4           1
 Y tyrosine            4.1         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 41B 
TMEM41A               0.252   transmembrane protein 41A 
TMEM64                0.014   transmembrane protein 64 isoform 1 
MUC5B                 0.014   mucin 5, subtype B, tracheobronchial 
FRMD8                 0.009   FERM domain containing 8 
SLC25A10              0.009   solute carrier family 25 (mitochondrial carrier; dic...
SLC35D2               0.007   solute carrier family 35, member D2 
MUC5AC                0.007   mucin 5AC 
LOC730429             0.007   PREDICTED: similar to ubiquitin protein ligase E3 c...
FAM38A                0.007   family with sequence similarity 38, member A 
UBR5                  0.007   ubiquitin protein ligase E3 component n-recognin 5 [...
TRPV3                 0.005   transient receptor potential cation channel, subfami...
RPP40                 0.005   ribonuclease P 40kDa subunit 
OR4F15                0.005   olfactory receptor, family 4, subfamily F, member 15...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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