Guide to the Human Genome
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Name: CYBB Sequence: fasta or formatted (570aa) NCBI GI: 6996021
Description:

cytochrome b-245 beta polypeptide

Referenced in:

Neutrophils, Eosinophils, and Basophils
Superoxide Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         38           2
 C cysteine            2.8         16           2
 D aspartate           2.8         16           1
 E glutamate           5.6         32           2
 F phenylalanine       6.8         39           2
 G glycine             6.0         34           2
 H histidine           3.0         17           2
 I isoleucine          6.8         39           2
 K lysine              6.0         34           3
 L leucine            10.0         57           2
 M methionine          1.8         10           1
 N asparagine          5.3         30           2
 P proline             3.9         22           2
 Q glutamine           3.2         18           2
 R arginine            4.6         26           2
 S serine              5.8         33           2
 T threonine           5.3         30           1
 V valine              7.4         42           2
 W tryptophan          3.2         18           1
 Y tyrosine            3.3         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytochrome b-245 beta polypeptide 
NOX3                  0.594   NADPH oxidase 3 
NOX1                  0.562   NADPH oxidase 1 isoform long 
NOX1                  0.488   NADPH oxidase 1 isoform long variant 
NOX4                  0.305   NADPH oxidase 4 isoform a 
NOX4                  0.291   NADPH oxidase 4 isoform c 
NOX4                  0.262   NADPH oxidase 4 isoform b 
DUOX2                 0.174   dual oxidase 2 precursor 
DUOX1                 0.168   dual oxidase 1 precursor 
DUOX1                 0.168   dual oxidase 1 precursor 
NOX5                  0.163   NADPH oxidase, EF-hand calcium binding domain 5 [Hom...
SLC7A6                0.004   solute carrier family 7 (cationic amino acid transp...
SLC7A6                0.004   solute carrier family 7 (cationic amino acid transp...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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