BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|6912712 translocase of inner mitochondrial membrane 8 homolog B [Homo sapiens] (83 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|6912712 translocase of inner mitochondrial membrane 8 homolog... 171 1e-43 gi|239752419 PREDICTED: similar to translocase of inner mitochon... 159 5e-40 gi|239746934 PREDICTED: similar to translocase of inner mitochon... 159 5e-40 gi|239757907 PREDICTED: similar to translocase of inner mitochon... 157 2e-39 gi|4758152 translocase of inner mitochondrial membrane 8 homolog... 78 1e-15 gi|11024700 translocase of inner mitochondrial membrane 13 [Homo... 44 3e-05 gi|6912382 fractured callus expressed transcript 1 [Homo sapiens] 33 0.037 gi|225543159 translocase of inner mitochondrial membrane 8 homol... 33 0.064 gi|60218910 golgi autoantigen, golgin subfamily a, 8G [Homo sapi... 27 4.6 gi|170295795 hypothetical protein LOC387071 [Homo sapiens] 26 6.0 >gi|6912712 translocase of inner mitochondrial membrane 8 homolog B [Homo sapiens] Length = 83 Score = 171 bits (432), Expect = 1e-43 Identities = 83/83 (100%), Positives = 83/83 (100%) Query: 1 MAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCV 60 MAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCV Sbjct: 1 MAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCV 60 Query: 61 DRFIDTTLAITSRFAQIVQKGGQ 83 DRFIDTTLAITSRFAQIVQKGGQ Sbjct: 61 DRFIDTTLAITSRFAQIVQKGGQ 83 >gi|239752419 PREDICTED: similar to translocase of inner mitochondrial membrane 8 homolog B [Homo sapiens] Length = 116 Score = 159 bits (402), Expect = 5e-40 Identities = 78/82 (95%), Positives = 78/82 (95%) Query: 2 AELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVD 61 AELGEAD AELQ LVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDS TENCLSSCVD Sbjct: 35 AELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVD 94 Query: 62 RFIDTTLAITSRFAQIVQKGGQ 83 FIDTTLAITSRFAQIVQKGGQ Sbjct: 95 HFIDTTLAITSRFAQIVQKGGQ 116 >gi|239746934 PREDICTED: similar to translocase of inner mitochondrial membrane 8 homolog B [Homo sapiens] Length = 116 Score = 159 bits (402), Expect = 5e-40 Identities = 78/82 (95%), Positives = 78/82 (95%) Query: 2 AELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVD 61 AELGEAD AELQ LVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDS TENCLSSCVD Sbjct: 35 AELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVD 94 Query: 62 RFIDTTLAITSRFAQIVQKGGQ 83 FIDTTLAITSRFAQIVQKGGQ Sbjct: 95 HFIDTTLAITSRFAQIVQKGGQ 116 >gi|239757907 PREDICTED: similar to translocase of inner mitochondrial membrane 8 homolog B (yeast) [Homo sapiens] Length = 136 Score = 157 bits (396), Expect = 2e-39 Identities = 77/82 (93%), Positives = 77/82 (93%) Query: 2 AELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVD 61 AELGEAD AE Q LVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDS TENCLSSCVD Sbjct: 55 AELGEADGAESQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVD 114 Query: 62 RFIDTTLAITSRFAQIVQKGGQ 83 FIDTTLAITSRFAQIVQKGGQ Sbjct: 115 HFIDTTLAITSRFAQIVQKGGQ 136 >gi|4758152 translocase of inner mitochondrial membrane 8 homolog A isoform 1 [Homo sapiens] Length = 97 Score = 78.2 bits (191), Expect = 1e-15 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Query: 2 AELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVD 61 A LG D +LQ + E QK +F VH ELCW+KC++KPG +LDSR E C +CV+ Sbjct: 10 AGLGAVDP-QLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACFVNCVE 68 Query: 62 RFIDTTLAITSRFAQ 76 RFIDT+ I +R Q Sbjct: 69 RFIDTSQFILNRLEQ 83 >gi|11024700 translocase of inner mitochondrial membrane 13 [Homo sapiens] Length = 95 Score = 43.9 bits (102), Expect = 3e-05 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 5/84 (5%) Query: 2 AELGEADEAELQRLVAAEQQKAQFTAQ-----VHHFMELCWDKCVEKPGNRLDSRTENCL 56 ++ G + +L + EQ K Q + + C+ KC+ KPG LD+ + C+ Sbjct: 7 SDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCI 66 Query: 57 SSCVDRFIDTTLAITSRFAQIVQK 80 + C+DR++D ++ + +Q+ Sbjct: 67 AMCMDRYMDAWNTVSRAYNSRLQR 90 >gi|6912382 fractured callus expressed transcript 1 [Homo sapiens] Length = 103 Score = 33.5 bits (75), Expect = 0.037 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 8/68 (11%) Query: 19 EQQKAQFTAQVHHFM-------ELCWDKCVEKPGNR-LDSRTENCLSSCVDRFIDTTLAI 70 +QQ+ Q + F+ ELC+ +CV +R LD+ E CL SC + I + + Sbjct: 4 QQQQQQQLRNLRDFLLVYNRMTELCFQRCVPSLHHRALDAEEEACLHSCAGKLIHSNHRL 63 Query: 71 TSRFAQIV 78 + + Q++ Sbjct: 64 MAAYVQLM 71 >gi|225543159 translocase of inner mitochondrial membrane 8 homolog A isoform 2 [Homo sapiens] Length = 48 Score = 32.7 bits (73), Expect = 0.064 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 2 AELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCW 37 A LG D +LQ + E QK +F VH ELCW Sbjct: 10 AGLGAVDP-QLQHFIEVETQKQRFQQLVHQMTELCW 44 >gi|60218910 golgi autoantigen, golgin subfamily a, 8G [Homo sapiens] Length = 434 Score = 26.6 bits (57), Expect = 4.6 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%) Query: 3 ELGEADEAELQRLVAAEQQKAQFTAQV 29 +LG+ E E RL AA QQK Q TAQ+ Sbjct: 192 KLGKVKETE--RLEAASQQKQQLTAQL 216 >gi|170295795 hypothetical protein LOC387071 [Homo sapiens] Length = 138 Score = 26.2 bits (56), Expect = 6.0 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 15/83 (18%) Query: 10 AELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDS---------RTENCLSSCV 60 A++Q LV +E +K Q + C C +K + +D+ + + C++ CV Sbjct: 62 AQVQALVTSELEKFQ------DHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCV 115 Query: 61 DRFIDTTLAITSRFAQIVQKGGQ 83 D I +T + + V G+ Sbjct: 116 DDHIHLISTMTKKMKEAVLSIGK 138 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.320 0.130 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,867,211 Number of Sequences: 37866 Number of extensions: 95744 Number of successful extensions: 234 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 226 Number of HSP's gapped (non-prelim): 10 length of query: 83 length of database: 18,247,518 effective HSP length: 55 effective length of query: 28 effective length of database: 16,164,888 effective search space: 452616864 effective search space used: 452616864 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.