Guide to the Human Genome
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Search of human proteins with 6912712

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6912712 translocase of inner mitochondrial membrane 8
homolog B [Homo sapiens]
         (83 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6912712 translocase of inner mitochondrial membrane 8 homolog...   171   1e-43
gi|239752419 PREDICTED: similar to translocase of inner mitochon...   159   5e-40
gi|239746934 PREDICTED: similar to translocase of inner mitochon...   159   5e-40
gi|239757907 PREDICTED: similar to translocase of inner mitochon...   157   2e-39
gi|4758152 translocase of inner mitochondrial membrane 8 homolog...    78   1e-15
gi|11024700 translocase of inner mitochondrial membrane 13 [Homo...    44   3e-05
gi|6912382 fractured callus expressed transcript 1 [Homo sapiens]      33   0.037
gi|225543159 translocase of inner mitochondrial membrane 8 homol...    33   0.064
gi|60218910 golgi autoantigen, golgin subfamily a, 8G [Homo sapi...    27   4.6  
gi|170295795 hypothetical protein LOC387071 [Homo sapiens]             26   6.0  

>gi|6912712 translocase of inner mitochondrial membrane 8 homolog
          B [Homo sapiens]
          Length = 83

 Score =  171 bits (432), Expect = 1e-43
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCV 60
          MAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCV
Sbjct: 1  MAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCV 60

Query: 61 DRFIDTTLAITSRFAQIVQKGGQ 83
          DRFIDTTLAITSRFAQIVQKGGQ
Sbjct: 61 DRFIDTTLAITSRFAQIVQKGGQ 83


>gi|239752419 PREDICTED: similar to translocase of inner
           mitochondrial membrane 8 homolog B [Homo sapiens]
          Length = 116

 Score =  159 bits (402), Expect = 5e-40
 Identities = 78/82 (95%), Positives = 78/82 (95%)

Query: 2   AELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVD 61
           AELGEAD AELQ LVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDS TENCLSSCVD
Sbjct: 35  AELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVD 94

Query: 62  RFIDTTLAITSRFAQIVQKGGQ 83
            FIDTTLAITSRFAQIVQKGGQ
Sbjct: 95  HFIDTTLAITSRFAQIVQKGGQ 116


>gi|239746934 PREDICTED: similar to translocase of inner
           mitochondrial membrane 8 homolog B [Homo sapiens]
          Length = 116

 Score =  159 bits (402), Expect = 5e-40
 Identities = 78/82 (95%), Positives = 78/82 (95%)

Query: 2   AELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVD 61
           AELGEAD AELQ LVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDS TENCLSSCVD
Sbjct: 35  AELGEADGAELQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVD 94

Query: 62  RFIDTTLAITSRFAQIVQKGGQ 83
            FIDTTLAITSRFAQIVQKGGQ
Sbjct: 95  HFIDTTLAITSRFAQIVQKGGQ 116


>gi|239757907 PREDICTED: similar to translocase of inner
           mitochondrial membrane 8 homolog B (yeast) [Homo
           sapiens]
          Length = 136

 Score =  157 bits (396), Expect = 2e-39
 Identities = 77/82 (93%), Positives = 77/82 (93%)

Query: 2   AELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVD 61
           AELGEAD AE Q LVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDS TENCLSSCVD
Sbjct: 55  AELGEADGAESQHLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSCTENCLSSCVD 114

Query: 62  RFIDTTLAITSRFAQIVQKGGQ 83
            FIDTTLAITSRFAQIVQKGGQ
Sbjct: 115 HFIDTTLAITSRFAQIVQKGGQ 136


>gi|4758152 translocase of inner mitochondrial membrane 8 homolog
          A isoform 1 [Homo sapiens]
          Length = 97

 Score = 78.2 bits (191), Expect = 1e-15
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 2  AELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVD 61
          A LG  D  +LQ  +  E QK +F   VH   ELCW+KC++KPG +LDSR E C  +CV+
Sbjct: 10 AGLGAVDP-QLQHFIEVETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACFVNCVE 68

Query: 62 RFIDTTLAITSRFAQ 76
          RFIDT+  I +R  Q
Sbjct: 69 RFIDTSQFILNRLEQ 83


>gi|11024700 translocase of inner mitochondrial membrane 13 [Homo
          sapiens]
          Length = 95

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 2  AELGEADEAELQRLVAAEQQKAQFTAQ-----VHHFMELCWDKCVEKPGNRLDSRTENCL 56
          ++ G +   +L   +  EQ K Q         +    + C+ KC+ KPG  LD+  + C+
Sbjct: 7  SDFGGSGSGKLDPGLIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCI 66

Query: 57 SSCVDRFIDTTLAITSRFAQIVQK 80
          + C+DR++D    ++  +   +Q+
Sbjct: 67 AMCMDRYMDAWNTVSRAYNSRLQR 90


>gi|6912382 fractured callus expressed transcript 1 [Homo sapiens]
          Length = 103

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 19 EQQKAQFTAQVHHFM-------ELCWDKCVEKPGNR-LDSRTENCLSSCVDRFIDTTLAI 70
          +QQ+ Q    +  F+       ELC+ +CV    +R LD+  E CL SC  + I +   +
Sbjct: 4  QQQQQQQLRNLRDFLLVYNRMTELCFQRCVPSLHHRALDAEEEACLHSCAGKLIHSNHRL 63

Query: 71 TSRFAQIV 78
           + + Q++
Sbjct: 64 MAAYVQLM 71


>gi|225543159 translocase of inner mitochondrial membrane 8
          homolog A isoform 2 [Homo sapiens]
          Length = 48

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 2  AELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCW 37
          A LG  D  +LQ  +  E QK +F   VH   ELCW
Sbjct: 10 AGLGAVDP-QLQHFIEVETQKQRFQQLVHQMTELCW 44


>gi|60218910 golgi autoantigen, golgin subfamily a, 8G [Homo
           sapiens]
          Length = 434

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 3   ELGEADEAELQRLVAAEQQKAQFTAQV 29
           +LG+  E E  RL AA QQK Q TAQ+
Sbjct: 192 KLGKVKETE--RLEAASQQKQQLTAQL 216


>gi|170295795 hypothetical protein LOC387071 [Homo sapiens]
          Length = 138

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 15/83 (18%)

Query: 10  AELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDS---------RTENCLSSCV 60
           A++Q LV +E +K Q        +  C   C +K  + +D+         + + C++ CV
Sbjct: 62  AQVQALVTSELEKFQ------DHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCV 115

Query: 61  DRFIDTTLAITSRFAQIVQKGGQ 83
           D  I     +T +  + V   G+
Sbjct: 116 DDHIHLISTMTKKMKEAVLSIGK 138


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,867,211
Number of Sequences: 37866
Number of extensions: 95744
Number of successful extensions: 234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 10
length of query: 83
length of database: 18,247,518
effective HSP length: 55
effective length of query: 28
effective length of database: 16,164,888
effective search space: 452616864
effective search space used: 452616864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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