Search of human proteins with 6912484

Search of human proteins with 6912484

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6912484 lysophospholipase 3 (lysosomal phospholipase A2)
[Homo sapiens]
         (412 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6912484 lysophospholipase 3 (lysosomal phospholipase A2) [Hom...   856   0.0  
gi|4557892 lecithin-cholesterol acyltransferase precursor [Homo ...   400   e-112
gi|50345294 hematological and neurological expressed 1 isoform 2...    30   3.1  
gi|110347416 gamma-aminobutyric acid (GABA) A receptor, gamma 3 ...    29   6.8  
gi|122692281 hypothetical protein LOC645369 [Homo sapiens]             29   8.9  

>gi|6912484 lysophospholipase 3 (lysosomal phospholipase A2) [Homo
           sapiens]
          Length = 412

 Score =  856 bits (2212), Expect = 0.0
 Identities = 412/412 (100%), Positives = 412/412 (100%)

Query: 1   MGLHLRPYRVGLLPDGLLFLLLLLMLLADPALPAGRHPPVVLVPGDLGNQLEAKLDKPTV 60
           MGLHLRPYRVGLLPDGLLFLLLLLMLLADPALPAGRHPPVVLVPGDLGNQLEAKLDKPTV
Sbjct: 1   MGLHLRPYRVGLLPDGLLFLLLLLMLLADPALPAGRHPPVVLVPGDLGNQLEAKLDKPTV 60

Query: 61  VHYLCSKKTESYFTIWLNLELLLPVIIDCWIDNIRLVYNKTSRATQFPDGVDVRVPGFGK 120
           VHYLCSKKTESYFTIWLNLELLLPVIIDCWIDNIRLVYNKTSRATQFPDGVDVRVPGFGK
Sbjct: 61  VHYLCSKKTESYFTIWLNLELLLPVIIDCWIDNIRLVYNKTSRATQFPDGVDVRVPGFGK 120

Query: 121 TFSLEFLDPSKSSVGSYFHTMVESLVGWGYTRGEDVRGAPYDWRRAPNENGPYFLALREM 180
           TFSLEFLDPSKSSVGSYFHTMVESLVGWGYTRGEDVRGAPYDWRRAPNENGPYFLALREM
Sbjct: 121 TFSLEFLDPSKSSVGSYFHTMVESLVGWGYTRGEDVRGAPYDWRRAPNENGPYFLALREM 180

Query: 181 IEEMYQLYGGPVVLVAHSMGNMYTLYFLQRQPQAWKDKYIRAFVSLGAPWGGVAKTLRVL 240
           IEEMYQLYGGPVVLVAHSMGNMYTLYFLQRQPQAWKDKYIRAFVSLGAPWGGVAKTLRVL
Sbjct: 181 IEEMYQLYGGPVVLVAHSMGNMYTLYFLQRQPQAWKDKYIRAFVSLGAPWGGVAKTLRVL 240

Query: 241 ASGDNNRIPVIGPLKIREQQRSAVSTSWLLPYNYTWSPEKVFVQTPTINYTLRDYRKFFQ 300
           ASGDNNRIPVIGPLKIREQQRSAVSTSWLLPYNYTWSPEKVFVQTPTINYTLRDYRKFFQ
Sbjct: 241 ASGDNNRIPVIGPLKIREQQRSAVSTSWLLPYNYTWSPEKVFVQTPTINYTLRDYRKFFQ 300

Query: 301 DIGFEDGWLMRQDTEGLVEATMPPGVQLHCLYGTGVPTPDSFYYESFPDRDPKICFGDGD 360
           DIGFEDGWLMRQDTEGLVEATMPPGVQLHCLYGTGVPTPDSFYYESFPDRDPKICFGDGD
Sbjct: 301 DIGFEDGWLMRQDTEGLVEATMPPGVQLHCLYGTGVPTPDSFYYESFPDRDPKICFGDGD 360

Query: 361 GTVNLKSALQCQAWQSRQEHQVLLQELPGSEHIEMLANATTLAYLKRVLLGP 412
           GTVNLKSALQCQAWQSRQEHQVLLQELPGSEHIEMLANATTLAYLKRVLLGP
Sbjct: 361 GTVNLKSALQCQAWQSRQEHQVLLQELPGSEHIEMLANATTLAYLKRVLLGP 412


>gi|4557892 lecithin-cholesterol acyltransferase precursor [Homo
           sapiens]
          Length = 440

 Score =  400 bits (1029), Expect = e-112
 Identities = 194/405 (47%), Positives = 266/405 (65%), Gaps = 7/405 (1%)

Query: 12  LLPDGLLFLLLLLMLL--ADPALPAGRHP-PVVLVPGDLGNQLEAKLDKPTVVHYLCSKK 68
           LLP    F LL ++      P      H  PV+LVPG LGNQLEAKLDKP VV+++C +K
Sbjct: 18  LLPPAAPFWLLNVLFPPHTTPKAELSNHTRPVILVPGCLGNQLEAKLDKPDVVNWMCYRK 77

Query: 69  TESYFTIWLNLELLLPVIIDCWIDNIRLVYNKTSRATQFPDGVDVRVPGFGKTFSLEFLD 128
           TE +FTIWL+L + LP+ +DCWIDN R+VYN++S       GV +RVPGFGKT+S+E+LD
Sbjct: 78  TEDFFTIWLDLNMFLPLGVDCWIDNTRVVYNRSSGLVSNAPGVQIRVPGFGKTYSVEYLD 137

Query: 129 PSKSSVGSYFHTMVESLVGWGYTRGEDVRGAPYDWRRAPNENGPYFLALREMIEEMYQLY 188
            SK  +  Y HT+V++LV  GY R E VR APYDWR  P +   Y+  L  ++EEM+  Y
Sbjct: 138 SSK--LAGYLHTLVQNLVNNGYVRDETVRAAPYDWRLEPGQQEEYYRKLAGLVEEMHAAY 195

Query: 189 GGPVVLVAHSMGNMYTLYFLQRQPQAWKDKYIRAFVSLGAPWGGVAKTLRVLASGDNNRI 248
           G PV L+ HS+G ++ LYFL RQPQAWKD++I  F+SLGAPWGG  K + VLASGDN  I
Sbjct: 196 GKPVFLIGHSLGCLHLLYFLLRQPQAWKDRFIDGFISLGAPWGGSIKPMLVLASGDNQGI 255

Query: 249 PVIGPLKIREQQRSAVSTSWLLPYNYTWSPEKVFVQTPTINYTLRDYRKFFQDIGFEDGW 308
           P++  +K++E+QR   ++ W+ P    W  + VF+ TP+ NYT RD+++FF D+ FE+GW
Sbjct: 256 PIMSSIKLKEEQRITTTSPWMFPSRMAWPEDHVFISTPSFNYTGRDFQRFFADLHFEEGW 315

Query: 309 LMRQDTEGLVEATMPPGVQLHCLYGTGVPTPDSFYYE-SFPDRDP-KICFGDGDGTVNLK 366
            M   +  L+     PGV+++CLYG G+PTP ++ Y+  FP  DP  + + DGD TV  +
Sbjct: 316 YMWLQSRDLLAGLPAPGVEVYCLYGVGLPTPRTYIYDHGFPYTDPVGVLYEDGDDTVATR 375

Query: 367 SALQCQAWQSRQEHQVLLQELPGSEHIEMLANATTLAYLKRVLLG 411
           S   C  WQ RQ   V L  L G +H+ M+ +  TL ++  +LLG
Sbjct: 376 STELCGLWQGRQPQPVHLLPLHGIQHLNMVFSNLTLEHINAILLG 420


>gi|50345294 hematological and neurological expressed 1 isoform 2
           [Homo sapiens]
          Length = 181

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 13/93 (13%)

Query: 113 VRVPGFGKTFSLEFLDPSKSSV------GSYFHTMVESLVGWGYTRG-------EDVRGA 159
           +R PG G  FSL F +P++  V       + F T  E+   W  + G       ED+  +
Sbjct: 21  LRPPGGGSNFSLGFDEPTEQPVRKNKMASNIFGTPEENQASWAKSAGAKSSGGREDLESS 80

Query: 160 PYDWRRAPNENGPYFLALREMIEEMYQLYGGPV 192
               R +   +   FL L++M  +  Q   G V
Sbjct: 81  GLQRRNSSEASSGDFLDLKKMWTQTCQAAWGRV 113


>gi|110347416 gamma-aminobutyric acid (GABA) A receptor, gamma 3
           [Homo sapiens]
          Length = 467

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 257 REQQRSAVSTSWLLPYNYTWSPEKVFVQTPTINYTLRDYR 296
           R+   +  +TS L P +  W PE++ +Q P+ NY+L D R
Sbjct: 344 RKPTTTKKTTSLLHPDSSRWIPERISLQAPS-NYSLLDMR 382


>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
          Length = 621

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 15/41 (36%), Positives = 18/41 (43%)

Query: 149 GYTRGEDVRGAPYDWRRAPNENGPYFLALREMIEEMYQLYG 189
           G  RG D  GA   W+R P E G   +   E+   M  L G
Sbjct: 387 GRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRG 427


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.141    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,903,519
Number of Sequences: 37866
Number of extensions: 868530
Number of successful extensions: 1498
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1492
Number of HSP's gapped (non-prelim): 6
length of query: 412
length of database: 18,247,518
effective HSP length: 105
effective length of query: 307
effective length of database: 14,271,588
effective search space: 4381377516
effective search space used: 4381377516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.