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Search of human proteins with 66932965
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66932965 histamine N-methyltransferase isoform 3 [Homo
sapiens]
(126 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66932965 histamine N-methyltransferase isoform 3 [Homo sapiens] 254 1e-68
gi|5901970 histamine N-methyltransferase isoform 1 [Homo sapiens] 130 3e-31
gi|66932963 histamine N-methyltransferase isoform 2 [Homo sapiens] 99 1e-21
gi|119964726 insulin-like growth factor 2 receptor precursor [Ho... 27 3.2
gi|55749789 DENN/MADD domain containing 1A isoform 2 [Homo sapiens] 27 3.2
gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens] 27 3.2
gi|7706687 Enah/Vasp-like [Homo sapiens] 27 5.4
gi|124517687 zinc finger protein 560 [Homo sapiens] 27 5.4
gi|21450853 oxysterol-binding protein-like protein 2 isoform 2 [... 27 5.4
gi|7662298 oxysterol-binding protein-like protein 2 isoform 1 [H... 27 5.4
gi|219842236 feline sarcoma oncogene isoform 4 [Homo sapiens] 26 9.2
gi|219842233 feline sarcoma oncogene isoform 3 [Homo sapiens] 26 9.2
gi|219842230 feline sarcoma oncogene isoform 2 [Homo sapiens] 26 9.2
gi|4503687 feline sarcoma oncogene isoform 1 [Homo sapiens] 26 9.2
gi|11056056 mitochondrial ribosomal protein S12 precursor [Homo ... 26 9.2
gi|16950589 mitochondrial ribosomal protein S12 precursor [Homo ... 26 9.2
gi|16950591 mitochondrial ribosomal protein S12 precursor [Homo ... 26 9.2
gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens] 26 9.2
gi|23943866 family with sequence similarity 5, member B [Homo sa... 26 9.2
>gi|66932965 histamine N-methyltransferase isoform 3 [Homo sapiens]
Length = 126
Score = 254 bits (649), Expect = 1e-68
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG 60
MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG
Sbjct: 1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG 60
Query: 61 GGADCLIRGSSRVLKRNSCFILCSTRQKDKPGMRIHDERSSELPFGAARLESKSAFPSFL 120
GGADCLIRGSSRVLKRNSCFILCSTRQKDKPGMRIHDERSSELPFGAARLESKSAFPSFL
Sbjct: 61 GGADCLIRGSSRVLKRNSCFILCSTRQKDKPGMRIHDERSSELPFGAARLESKSAFPSFL 120
Query: 121 VSFILF 126
VSFILF
Sbjct: 121 VSFILF 126
>gi|5901970 histamine N-methyltransferase isoform 1 [Homo sapiens]
Length = 292
Score = 130 bits (326), Expect = 3e-31
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG 60
MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG
Sbjct: 1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG 60
Query: 61 GGA 63
GGA
Sbjct: 61 GGA 63
>gi|66932963 histamine N-methyltransferase isoform 2 [Homo
sapiens]
Length = 51
Score = 98.6 bits (244), Expect = 1e-21
Identities = 46/46 (100%), Positives = 46/46 (100%)
Query: 1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGR 46
MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGR
Sbjct: 1 MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGR 46
>gi|119964726 insulin-like growth factor 2 receptor precursor [Homo
sapiens]
Length = 2491
Score = 27.3 bits (59), Expect = 3.2
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 27 TEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGADCLIRGSSRVLKRNSC 79
TE+ C +++++ K + G D ++ L+ GG+ + G + N C
Sbjct: 314 TEYACHRDYLESKTCSLSGEQQDVSIDLTPLAQSGGSSYISDGKEYLFYLNVC 366
>gi|55749789 DENN/MADD domain containing 1A isoform 2 [Homo sapiens]
Length = 559
Score = 27.3 bits (59), Expect = 3.2
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 18 SFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG--GGADCLIRGSSRVLK 75
+ R+FL ++T+ Q ++F+D +L + G + + +++G G+D L ++
Sbjct: 350 AMRQFLQNATQLQLFKQFIDGRLDLLNSGEGFSDVFEEEINMGEYAGSDKLYHQWLSTVR 409
Query: 76 RNSCFILCSTRQKDKPGMR 94
+ S IL + + K P M+
Sbjct: 410 KGSGAILNTVKTKANPAMK 428
>gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens]
Length = 1009
Score = 27.3 bits (59), Expect = 3.2
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 18 SFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIG--GGADCLIRGSSRVLK 75
+ R+FL ++T+ Q ++F+D +L + G + + +++G G+D L ++
Sbjct: 350 AMRQFLQNATQLQLFKQFIDGRLDLLNSGEGFSDVFEEEINMGEYAGSDKLYHQWLSTVR 409
Query: 76 RNSCFILCSTRQKDKPGMR 94
+ S IL + + K P M+
Sbjct: 410 KGSGAILNTVKTKANPAMK 428
>gi|7706687 Enah/Vasp-like [Homo sapiens]
Length = 418
Score = 26.6 bits (57), Expect = 5.4
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 48 GDTKSEIKILSIGGGADCLIRGSSRVLKRNSCFILCSTRQKDKPGMRIHDERSSELP 104
G +KS+ S GGG L+ +++L + + Q DKP + DE E P
Sbjct: 251 GTSKSDANRASSGGGGGGLMEEMNKLLAKRR----KAASQSDKPAEKKEDESQMEDP 303
>gi|124517687 zinc finger protein 560 [Homo sapiens]
Length = 790
Score = 26.6 bits (57), Expect = 5.4
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 7 SLFSDHGKYVESFRRFLNHSTEHQCMQE 34
S+FS HGK SFR LN + +C Q+
Sbjct: 265 SVFSKHGK---SFRLILNVQVQRKCTQD 289
>gi|21450853 oxysterol-binding protein-like protein 2 isoform 2
[Homo sapiens]
Length = 480
Score = 26.6 bits (57), Expect = 5.4
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 23 LNHSTEHQCMQEF-----MDKKLPGIIGRIGDTKSEIKILSIGGGADCL 66
LNH T H+C+ F K+L + G I D + + G +CL
Sbjct: 258 LNHRTGHKCVLHFKPCGLFGKELHKVEGHIQDKNKKKLFMIYGKWTECL 306
>gi|7662298 oxysterol-binding protein-like protein 2 isoform 1 [Homo
sapiens]
Length = 468
Score = 26.6 bits (57), Expect = 5.4
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 23 LNHSTEHQCMQEF-----MDKKLPGIIGRIGDTKSEIKILSIGGGADCL 66
LNH T H+C+ F K+L + G I D + + G +CL
Sbjct: 246 LNHRTGHKCVLHFKPCGLFGKELHKVEGHIQDKNKKKLFMIYGKWTECL 294
>gi|219842236 feline sarcoma oncogene isoform 4 [Homo sapiens]
Length = 694
Score = 25.8 bits (55), Expect = 9.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 4 SMRSLFSDHGKYVESFRRF-LNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEI 54
S+ LF+ H +YV R L+H HQ + LPG++ + D E+
Sbjct: 117 SLWKLFAHHNRYVLGVRAAQLHHQHHHQLL-------LPGLLRSLQDLHEEM 161
>gi|219842233 feline sarcoma oncogene isoform 3 [Homo sapiens]
Length = 752
Score = 25.8 bits (55), Expect = 9.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 4 SMRSLFSDHGKYVESFRRF-LNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEI 54
S+ LF+ H +YV R L+H HQ + LPG++ + D E+
Sbjct: 175 SLWKLFAHHNRYVLGVRAAQLHHQHHHQLL-------LPGLLRSLQDLHEEM 219
>gi|219842230 feline sarcoma oncogene isoform 2 [Homo sapiens]
Length = 764
Score = 25.8 bits (55), Expect = 9.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 4 SMRSLFSDHGKYVESFRRF-LNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEI 54
S+ LF+ H +YV R L+H HQ + LPG++ + D E+
Sbjct: 117 SLWKLFAHHNRYVLGVRAAQLHHQHHHQLL-------LPGLLRSLQDLHEEM 161
>gi|4503687 feline sarcoma oncogene isoform 1 [Homo sapiens]
Length = 822
Score = 25.8 bits (55), Expect = 9.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 4 SMRSLFSDHGKYVESFRRF-LNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEI 54
S+ LF+ H +YV R L+H HQ + LPG++ + D E+
Sbjct: 175 SLWKLFAHHNRYVLGVRAAQLHHQHHHQLL-------LPGLLRSLQDLHEEM 219
>gi|11056056 mitochondrial ribosomal protein S12 precursor [Homo
sapiens]
Length = 138
Score = 25.8 bits (55), Expect = 9.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 57 LSIGGGADCLIRGSSRVLKRNSCFILCSTRQKDKPGMRI 95
LS G A C I G L+ + ++ R +D PG+++
Sbjct: 85 LSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKL 123
>gi|16950589 mitochondrial ribosomal protein S12 precursor [Homo
sapiens]
Length = 138
Score = 25.8 bits (55), Expect = 9.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 57 LSIGGGADCLIRGSSRVLKRNSCFILCSTRQKDKPGMRI 95
LS G A C I G L+ + ++ R +D PG+++
Sbjct: 85 LSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKL 123
>gi|16950591 mitochondrial ribosomal protein S12 precursor [Homo
sapiens]
Length = 138
Score = 25.8 bits (55), Expect = 9.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 57 LSIGGGADCLIRGSSRVLKRNSCFILCSTRQKDKPGMRI 95
LS G A C I G L+ + ++ R +D PG+++
Sbjct: 85 LSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKL 123
>gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens]
Length = 822
Score = 25.8 bits (55), Expect = 9.2
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 6 RSLFSDHGKYVESFRRFLNHSTE--HQCMQEFMDKKLPGIIGRIGDTKSEIKILSI 59
++L + + KYV+ FR N + H + + K L G++GRI + K+E+ L +
Sbjct: 40 QTLATFYVKYVQIFRNLENVYDQFVHPQKRILIRKVLDGVMGRILELKNEMVELEL 95
>gi|23943866 family with sequence similarity 5, member B [Homo
sapiens]
Length = 783
Score = 25.8 bits (55), Expect = 9.2
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 49 DTKSEIKILSIGGGADCLIRGSSRVLKRNSCFILCSTRQKDKPGMRIHDERSSELPFGAA 108
DT + + +G G L + + R+L+R F LC R +P R+ ERS L +
Sbjct: 365 DTSLQHRYQQLGAGLKVLFKKTHRILRR--LFNLCK-RCHRQPRFRLPKERS--LSYWWN 419
Query: 109 RLES-----KSAFP 117
R++S +S FP
Sbjct: 420 RIQSLLYCGESTFP 433
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,355,985
Number of Sequences: 37866
Number of extensions: 161268
Number of successful extensions: 413
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 19
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.