Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 65301161
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|65301161 polymerase (RNA) III (DNA directed) polypeptide H
(22.9kD) isoform a [Homo sapiens]
(204 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|65301161 polymerase (RNA) III (DNA directed) polypeptide H (2... 423 e-119
gi|24475814 polymerase (RNA) III (DNA directed) polypeptide H (2... 423 e-119
gi|65301135 polymerase (RNA) III (DNA directed) polypeptide H (2... 345 2e-95
gi|4505947 DNA directed RNA polymerase II polypeptide G [Homo sa... 38 0.007
gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo sap... 31 0.83
gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo sap... 31 0.83
gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo sap... 31 0.83
gi|4507545 G protein-coupled receptor 137B [Homo sapiens] 31 0.83
gi|145312265 endoplasmic reticulum to nucleus signalling 2 [Homo... 30 1.4
gi|148727368 bromodomain and PHD finger containing, 3 [Homo sapi... 29 2.4
gi|109702906 inositol polyphosphate-5-phosphatase A [Homo sapiens] 28 5.4
gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens] 28 7.1
gi|210031233 PR domain containing 6 [Homo sapiens] 28 7.1
gi|221307578 RUN domain containing 3A isoform 1 [Homo sapiens] 28 7.1
gi|5730015 RUN domain containing 3A isoform 2 [Homo sapiens] 28 7.1
gi|38505161 tudor domain containing 1 [Homo sapiens] 27 9.2
gi|31542509 ADP-dependent glucokinase [Homo sapiens] 27 9.2
gi|27477136 zinc finger antiviral protein isoform 1 [Homo sapiens] 27 9.2
gi|27477138 zinc finger antiviral protein isoform 2 [Homo sapiens] 27 9.2
>gi|65301161 polymerase (RNA) III (DNA directed) polypeptide H
(22.9kD) isoform a [Homo sapiens]
Length = 204
Score = 423 bits (1088), Expect = e-119
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120
PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120
Query: 121 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK 180
DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK
Sbjct: 121 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK 180
Query: 181 EAPYTLVGSISEPGLGLLSWWTSN 204
EAPYTLVGSISEPGLGLLSWWTSN
Sbjct: 181 EAPYTLVGSISEPGLGLLSWWTSN 204
>gi|24475814 polymerase (RNA) III (DNA directed) polypeptide H
(22.9kD) isoform a [Homo sapiens]
Length = 204
Score = 423 bits (1088), Expect = e-119
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120
PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120
Query: 121 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK 180
DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK
Sbjct: 121 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK 180
Query: 181 EAPYTLVGSISEPGLGLLSWWTSN 204
EAPYTLVGSISEPGLGLLSWWTSN
Sbjct: 181 EAPYTLVGSISEPGLGLLSWWTSN 204
>gi|65301135 polymerase (RNA) III (DNA directed) polypeptide H
(22.9kD) isoform b [Homo sapiens]
Length = 175
Score = 345 bits (885), Expect = 2e-95
Identities = 175/204 (85%), Positives = 175/204 (85%), Gaps = 29/204 (14%)
Query: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120
PGDGASHTK VSLGFFDDILIPPESLQQPAKF
Sbjct: 61 PGDGASHTK-----------------------------VSLGFFDDILIPPESLQQPAKF 91
Query: 121 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK 180
DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK
Sbjct: 92 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKK 151
Query: 181 EAPYTLVGSISEPGLGLLSWWTSN 204
EAPYTLVGSISEPGLGLLSWWTSN
Sbjct: 152 EAPYTLVGSISEPGLGLLSWWTSN 175
>gi|4505947 DNA directed RNA polymerase II polypeptide G [Homo
sapiens]
Length = 172
Score = 37.7 bits (86), Expect = 0.007
Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 5/153 (3%)
Query: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
MF + + + + P F L +++ ++L ++ G I + I + +
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120
PG G V ++ +VF PF E++ + + G+ +G I S+ +F
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPM-SCFISRHSIPSEMEF 119
Query: 121 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVV 153
D ++ E D+ + +EIR ++V
Sbjct: 120 DPNSNPPCYKTMDE----DIVIQQDDEIRLKIV 148
>gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo
sapiens]
Length = 1826
Score = 30.8 bits (68), Expect = 0.83
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 106 DILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDE----SFVDTS 161
DI+ + + P K +EA + E + E D+ D G R+ D SFVD +
Sbjct: 381 DIIAKSQGSRDPPKVEEAHYITTHEIQLSEVEQDMDFDVGLASRWDFEDNNVIYSFVDYA 440
Query: 162 PTGPSS---ADATTSSEE 176
G S D T+ +EE
Sbjct: 441 SFGGSDETPGDITSLTEE 458
>gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo
sapiens]
Length = 1826
Score = 30.8 bits (68), Expect = 0.83
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 106 DILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDE----SFVDTS 161
DI+ + + P K +EA + E + E D+ D G R+ D SFVD +
Sbjct: 381 DIIAKSQGSRDPPKVEEAHYITTHEIQLSEVEQDMDFDVGLASRWDFEDNNVIYSFVDYA 440
Query: 162 PTGPSS---ADATTSSEE 176
G S D T+ +EE
Sbjct: 441 SFGGSDETPGDITSLTEE 458
>gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo
sapiens]
Length = 1826
Score = 30.8 bits (68), Expect = 0.83
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 106 DILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDE----SFVDTS 161
DI+ + + P K +EA + E + E D+ D G R+ D SFVD +
Sbjct: 381 DIIAKSQGSRDPPKVEEAHYITTHEIQLSEVEQDMDFDVGLASRWDFEDNNVIYSFVDYA 440
Query: 162 PTGPSS---ADATTSSEE 176
G S D T+ +EE
Sbjct: 441 SFGGSDETPGDITSLTEE 458
>gi|4507545 G protein-coupled receptor 137B [Homo sapiens]
Length = 399
Score = 30.8 bits (68), Expect = 0.83
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
+F+LV + V + +ERK+ S+ +N L V+ V L ICL+ I+K+ A ++
Sbjct: 168 VFLLVNLTCAVLVKTGNWERKVIVSVRVAINDTLF--VLCAVSLSICLYKISKMSLANIY 225
>gi|145312265 endoplasmic reticulum to nucleus signalling 2 [Homo
sapiens]
Length = 974
Score = 30.0 bits (66), Expect = 1.4
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 97 VHVSLGFFDDILIPPESLQQPAKFDE-----AEQVWVWEYETEEGAHDLYMDTGEE 147
VH +LG PPE+ Q PA F E E++W E EE D Y+ G +
Sbjct: 424 VHPTLGSGTAETRPPENTQAPAFFLELLSLSREKLWDSELHPEEKTPDSYLGLGPQ 479
>gi|148727368 bromodomain and PHD finger containing, 3 [Homo
sapiens]
Length = 1205
Score = 29.3 bits (64), Expect = 2.4
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 91 GCSPEGVHVSLGFFDDILIPPESLQQPAKFDEAEQVWVW-----EYETEEGAHDLYMDTG 145
G PE + ++ I PPE L ++D E+ W E +G + DT
Sbjct: 125 GIQPEAPPLPAAYYRYIEKPPEDLDAEVEYDMDEEDLAWLDMVNEKRRVDGHSLVSADTF 184
Query: 146 EEIRFRVVDESFVDTSPTG 164
E + R+ ES++++ +G
Sbjct: 185 ELLVDRLEKESYLESRSSG 203
>gi|109702906 inositol polyphosphate-5-phosphatase A [Homo sapiens]
Length = 412
Score = 28.1 bits (61), Expect = 5.4
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 6 EMVDTVRIPPWQFERKLNDSIAEEL--NKKLANKVVY--NVGLCICLFDITKLEDAY-VF 60
E R P W +R L A+EL + KVV ++G +C+ D + A+ +
Sbjct: 337 EQYMNTRCPAW-CDRILMSPSAKELVLRSESEEKVVTYDHIGPNVCMGDHKPVFLAFRIM 395
Query: 61 PGDGASHTKVHFRCVV 76
PG G H VH CVV
Sbjct: 396 PGAGKPHAHVHKCCVV 411
>gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]
Length = 1282
Score = 27.7 bits (60), Expect = 7.1
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 123 AEQVWVWEYETEEG----AHDLYMDTGEEIRFRVVDESFVDTSPT-GPSS-ADATTSSEE 176
AE+V+ E E+EE A + + E IR ++ S V + GP + D T+ E
Sbjct: 584 AEEVFASEDESEESSSLSAEEEDSENEEAIRKKLSKPSQVSSGQKLGPQNFIDETSDIEN 643
Query: 177 LPKKEAPYTLVGSISEPGLGLLSW 200
L K+E Y + S+ G L W
Sbjct: 644 LLKEEEDYKEENNDSKETSGALKW 667
>gi|210031233 PR domain containing 6 [Homo sapiens]
Length = 595
Score = 27.7 bits (60), Expect = 7.1
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 101 LGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGE 146
+G F +L+PPE +Q A + +WE ++G ++D GE
Sbjct: 274 IGPFQGVLLPPEKVQAGAVRNTQH---LWEIYDQDGTLQHFIDGGE 316
>gi|221307578 RUN domain containing 3A isoform 1 [Homo sapiens]
Length = 446
Score = 27.7 bits (60), Expect = 7.1
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 44 LCICLFDITKLEDAYVF-PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEG 96
+ +C F + L + Y P D +S V+F + L++IL + K C+P G
Sbjct: 32 ITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAI-----LEQILSHRFKACAPAG 80
>gi|5730015 RUN domain containing 3A isoform 2 [Homo sapiens]
Length = 405
Score = 27.7 bits (60), Expect = 7.1
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 44 LCICLFDITKLEDAYVF-PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEG 96
+ +C F + L + Y P D +S V+F + L++IL + K C+P G
Sbjct: 32 ITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAI-----LEQILSHRFKACAPAG 80
>gi|38505161 tudor domain containing 1 [Homo sapiens]
Length = 1189
Score = 27.3 bits (59), Expect = 9.2
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 22/63 (34%)
Query: 22 LNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGA------------SHTK 69
LN S+AE +KL N +G C F F GDG+ H K
Sbjct: 745 LNKSLAEHCQQKLPNGFKAEIGQPCCAF----------FAGDGSWYRALVKEILPNGHVK 794
Query: 70 VHF 72
VHF
Sbjct: 795 VHF 797
>gi|31542509 ADP-dependent glucokinase [Homo sapiens]
Length = 496
Score = 27.3 bits (59), Expect = 9.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 88 KIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120
K+ C P G + D++ +PPESLQ+ +F
Sbjct: 174 KVLLCGPVGPKLHELLDDNVFVPPESLQEVDEF 206
>gi|27477136 zinc finger antiviral protein isoform 1 [Homo sapiens]
Length = 902
Score = 27.3 bits (59), Expect = 9.2
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 30/120 (25%)
Query: 66 SHTKVHFRCVVFHPFLDEILIGKI-----------KGCSPEGVHV-SLGFF--------- 104
S +KVHF P+ ++LIGK KG G+H+ S+G +
Sbjct: 526 SCSKVHFHL----PYRWQMLIGKTWTDFEHMETIEKGYCNPGIHLCSVGSYTINFRVMSC 581
Query: 105 DDI----LIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDT 160
D L P S+ +PA + W+W ++ E G Y + ++ + VD S++++
Sbjct: 582 DSFPIRRLSTPSSVTKPANSVFTTK-WIWYWKNESGTWIQYGEEKDKRKNSNVDSSYLES 640
>gi|27477138 zinc finger antiviral protein isoform 2 [Homo sapiens]
Length = 699
Score = 27.3 bits (59), Expect = 9.2
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 30/120 (25%)
Query: 66 SHTKVHFRCVVFHPFLDEILIGKI-----------KGCSPEGVHV-SLGFF--------- 104
S +KVHF P+ ++LIGK KG G+H+ S+G +
Sbjct: 526 SCSKVHFHL----PYRWQMLIGKTWTDFEHMETIEKGYCNPGIHLCSVGSYTINFRVMSC 581
Query: 105 DDI----LIPPESLQQPAKFDEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDT 160
D L P S+ +PA + W+W ++ E G Y + ++ + VD S++++
Sbjct: 582 DSFPIRRLSTPSSVTKPANSVFTTK-WIWYWKNESGTWIQYGEEKDKRKNSNVDSSYLES 640
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,615,967
Number of Sequences: 37866
Number of extensions: 391162
Number of successful extensions: 1002
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 996
Number of HSP's gapped (non-prelim): 20
length of query: 204
length of database: 18,247,518
effective HSP length: 97
effective length of query: 107
effective length of database: 14,574,516
effective search space: 1559473212
effective search space used: 1559473212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.